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MS-based metabolomics annotation pipeline

Bioconductor version: Release (3.19)

MS-based metabolomics data processing and compound annotation pipeline.

Author: Ron Wehrens [aut] (author of GC-MS part, Initial Maintainer), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline), Yann Guitton [ctb, cre] , Julien Saint-Vanne [ctb]

Maintainer: Yann Guitton <yann.guitton at>

Citation (from within R, enter citation("metaMS")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

runGC PDF R Script
runLC PDF R Script
Reference Manual PDF


biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.40.0
In Bioconductor since BioC 2.14 (R-3.1) (10.5 years)
License GPL (>= 2)
Depends R (>= 4.0), methods, CAMERA, xcms(>= 1.35)
Imports Matrix, tools, robustbase, BiocGenerics, graphics, stats, utils
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Suggests metaMSdata, RUnit
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Follow Installation instructions to use this package in your R session.

Source Package metaMS_1.40.0.tar.gz
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macOS Binary (x86_64) metaMS_1.40.0.tgz
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