metapod
Meta-Analyses on P-Values of Differential Analyses
Bioconductor version: Release (3.19)
Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("metapod")
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Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metapod")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metapod")
Meta-analysis strategies | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DifferentialPeakCalling, MultipleComparison, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
License | GPL-3 |
Depends | |
Imports | Rcpp |
System Requirements | C++11 |
URL |
See More
Suggests | testthat, knitr, BiocStyle, rmarkdown |
Linking To | Rcpp |
Enhances | |
Depends On Me | |
Imports Me | csaw, mumosa, scp, scran |
Suggests Me | TSCAN |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | metapod_1.12.0.tar.gz |
Windows Binary | metapod_1.12.0.zip |
macOS Binary (x86_64) | metapod_1.12.0.tgz |
macOS Binary (arm64) | metapod_1.12.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/metapod |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/metapod |
Bioc Package Browser | https://code.bioconductor.org/browse/metapod/ |
Package Short Url | https://bioconductor.org/packages/metapod/ |
Package Downloads Report | Download Stats |