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methylGSA

This is the released version of methylGSA; for the devel version, see methylGSA.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Gene Set Analysis Using the Outcome of Differential Methylation

DOI: 10.18129/B9.bioc.methylGSA

Bioconductor version: Release (3.23)

The main functions for methylGSA are methylglm and methylRRA. methylGSA implements logistic regression adjusting number of probes as a covariate. methylRRA adjusts multiple p-values of each gene by Robust Rank Aggregation. For more detailed help information, please see the vignette.

Author: Xu Ren [aut, cre], Pei Fen Kuan [aut]

Maintainer: Xu Ren <xuren2120 at gmail.com>

Citation (from within R, enter citation("methylGSA")):

Xu Ren, Pei Fen Kuan. methylGSA: Gene Set Analysis Using the Outcome of Differential Methylation. doi:10.18129/B9.bioc.methylGSA, R package version 1.30.0, https://bioconductor.org/packages/methylGSA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylGSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylGSA")

Details

Package Archives

Follow Installation instructions to use this package in your R session.