DOI: 10.18129/B9.bioc.msgbsR    

msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions

Bioconductor version: Release (3.8)

Pipeline for the anaysis of a MS-GBS experiment.

Author: Benjamin Mayne

Maintainer: Benjamin Mayne <benjamin.mayne at>

Citation (from within R, enter citation("msgbsR")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("msgbsR", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script msgbsR_Example
PDF   Reference Manual


biocViews DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Software
Version 1.6.1
In Bioconductor since BioC 3.8 (R-3.5) (< 6 months)
License GPL-2
Depends R (>= 3.4), GenomicRanges, methods
Imports BSgenome, easyRNASeq, edgeR, GenomicAlignments, GenomicFeatures, GenomeInfoDb, ggbio, ggplot2, IRanges, parallel, plyr, Rsamtools, R.utils, stats, SummarizedExperiment, S4Vectors, utils
Suggests roxygen2, BSgenome.Rnorvegicus.UCSC.rn6
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msgbsR_1.6.1.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) msgbsR_1.6.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

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