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ncdfFlow

This is the released version of ncdfFlow; for the devel version, see ncdfFlow.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9

ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.


Bioconductor version: Release (3.23)

Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.

Author: Mike Jiang,Greg Finak,N. Gopalakrishnan

Maintainer: Mike Jiang <mike at ozette.com>

Citation (from within R, enter citation("ncdfFlow")):

Mike Jiang, Greg Finak, N. Gopalakrishnan. ncdfFlow: ncdfFlow: A package that provides HDF5 based storage for flow cytometry data. doi:10.18129/B9.bioc.ncdfFlow, R package version 2.58.0, https://bioconductor.org/packages/ncdfFlow.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ncdfFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ncdfFlow")
Basic Functions for Flow Cytometry Data PDF R Script
Reference ManualPDF
READMEText
NEWSText
LICENSEText

Details

biocViews FlowCytometry, ImmunoOncology, Software
Version2.58.0
In Bioconductor sinceBioC 2.9 (R-2.14) (15 years)
License AGPL-3.0-only
Depends R (>= 2.14.0), flowCore (>= 1.51.7), methods, BH
Imports Biobase, BiocGenerics, flowCore
System Requirements
URL
See More
Suggests testthat, parallel, flowStats, knitr
Linking To cpp11, BH, Rhdf5lib
Enhances
Depends On Me ggcyto
Imports Me flowStats, flowWorkspace, openCyto
Suggests Me cydar
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ncdfFlow_2.58.0.tar.gz
Windows Binary (x86_64) ncdfFlow_2.58.0.zip (64-bit only)
macOS Binary (big-sur-x86_64) ncdfFlow_2.58.0.tgz
macOS Binary (sonoma-arm64) ncdfFlow_2.58.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/ncdfFlow
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/ncdfFlow
Package Short Url https://bioconductor.org/packages/ncdfFlow/
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