Welcome to the new bioconductor.org!

pathVar

Methods to Find Pathways with Significantly Different Variability


Bioconductor version: Release (3.18)

This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.

Author: Laurence de Torrente, Samuel Zimmerman, Jessica Mar

Maintainer: Samuel Zimmerman <samuel.e.zimmerman at gmail.com>

Citation (from within R, enter citation("pathVar")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pathVar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews GeneSetEnrichment, GeneticVariability, Pathways, Software
Version 1.32.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License LGPL (>= 2.0)
Depends R (>= 3.3.0), methods, ggplot2, gridExtra
Imports EMT, mclust, Matching, data.table, stats, grDevices, graphics, utils
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary pathVar_1.32.0.zip (64-bit only)
macOS Binary (x86_64) pathVar_1.32.0.tgz
macOS Binary (arm64) pathVar_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/pathVar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/pathVar
Bioc Package Browser https://code.bioconductor.org/browse/pathVar/
Package Short Url https://bioconductor.org/packages/pathVar/
Package Downloads Report Download Stats