DOI: 10.18129/B9.bioc.proBAMr    

Generating SAM file for PSMs in shotgun proteomics data

Bioconductor version: Release (3.8)

Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang < at>

Citation (from within R, enter citation("proBAMr")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("proBAMr", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Introduction to proBAMr
PDF   Reference Manual
Text   NEWS


biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software, Visualization
Version 1.16.1
In Bioconductor since BioC 3.0 (R-3.1) (4.5 years)
License Artistic-2.0
Depends R (>= 3.0.1), IRanges, AnnotationDbi
Imports GenomicRanges, Biostrings, GenomicFeatures, rtracklayer
Suggests RUnit, BiocGenerics
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package proBAMr_1.16.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) proBAMr_1.16.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats
Old Source Packages for BioC 3.8 Source Archive

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: