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rhdf5filters

This is the released version of rhdf5filters; for the devel version, see rhdf5filters.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

HDF5 Compression Filters


Bioconductor version: Release (3.23)

Provides a collection of additional compression filters for HDF5 datasets. The package is intended to provide seamless integration with rhdf5, however the compiled filters can also be used with external applications.

Author: Mike Smith [aut, ccp] ORCID iD ORCID: 0000-0002-7800-3848 , Hugo Gruson [cre] ORCID iD ORCID: 0000-0002-4094-1476

Maintainer: Hugo Gruson <hugo.gruson at embl.de>

Citation (from within R, enter citation("rhdf5filters")):

Mike Smith. rhdf5filters: HDF5 Compression Filters. doi:10.18129/B9.bioc.rhdf5filters, R package version 1.24.1, https://bioconductor.org/packages/rhdf5filters.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5filters")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rhdf5filters")
HDF5 Compression Filters HTML R Script
Reference ManualPDF
NEWSText
LICENSEText

Details

biocViews DataImport, Infrastructure, Software
Version1.24.1
In Bioconductor sinceBioC 3.11 (R-4.0) (6.5 years)
License BSD_2_clause + file LICENSE
Depends
Imports
System RequirementsGNU make
URLhttps://github.com/Huber-group-EMBL/rhdf5filters
Bug Reportshttps://github.com/Huber-group-EMBL/rhdf5filters/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, rhdf5 (>= 2.47.7)
Linking To Rhdf5lib
Enhances
Depends On Me
Imports Me h5mread, rhdf5
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rhdf5filters_1.24.1.tar.gz
Windows Binary (x86_64) rhdf5filters_1.24.1.zip (64-bit only)
macOS Binary (big-sur-x86_64) rhdf5filters_1.24.1.tgz
macOS Binary (sonoma-arm64) rhdf5filters_1.24.1.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/rhdf5filters
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/rhdf5filters
Package Short Url https://bioconductor.org/packages/rhdf5filters/
Package Downloads ReportDownload Stats
Old Source Packages for BioC 3.23Source Archive