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scMitoMut

This is the released version of scMitoMut; for the devel version, see scMitoMut.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19

Single-cell Mitochondrial Mutation Analysis Tool

DOI: 10.18129/B9.bioc.scMitoMut

Bioconductor version: Release (3.23)

This package is designed for calling lineage-informative mitochondrial mutations using single-cell sequencing data, such as scRNASeq and scATACSeq (preferably the latter due to RNA editing issues). It includes functions for mutation calling and visualization. Mutation calling is done using beta-binomial distribution.

Author: Wenjie Sun [cre, aut] ORCID: 0000-0002-3100-2346 , Leila Perie [ctb]

Maintainer: Wenjie Sun <sunwjie at gmail.com>

Citation (from within R, enter citation("scMitoMut")):

Wenjie Sun. scMitoMut: Single-cell Mitochondrial Mutation Analysis Tool. doi:10.18129/B9.bioc.scMitoMut, R package version 1.8.0, https://bioconductor.org/packages/scMitoMut.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scMitoMut")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scMitoMut")

Details

Package Archives

Follow Installation instructions to use this package in your R session.