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sevenbridges

Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R


Bioconductor version: Release (3.18)

R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.

Author: Phil Webster [aut, cre], Soner Koc [aut] , Nan Xiao [aut], Tengfei Yin [aut], Dusan Randjelovic [ctb], Emile Young [ctb], Velsera [cph, fnd]

Maintainer: Phil Webster <phil.webster at velsera.com>

Citation (from within R, enter citation("sevenbridges")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sevenbridges")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sevenbridges")
Complete Guide for Seven Bridges API R Client HTML R Script
Creating Your Docker Container and Command Line Interface (with docopt) HTML R Script
Describe and Execute CWL Tools/Workflows in R HTML R Script
Find Data on CGC via Data Browser and Datasets API HTML R Script
IDE Container: RStudio Server, Shiny Server, and More HTML R Script
Master Tutorial: Use R for Cancer Genomics Cloud HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, Software, ThirdPartyClient
Version 1.32.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License Apache License 2.0 | file LICENSE
Depends methods, utils, stats
Imports httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, data.table
System Requirements
URL https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r
Bug Reports https://github.com/sbg/sevenbridges-r/issues
See More
Suggests knitr, rmarkdown, testthat, readr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sevenbridges_1.32.0.tar.gz
Windows Binary sevenbridges_1.32.0.zip
macOS Binary (x86_64) sevenbridges_1.32.0.tgz
macOS Binary (arm64) sevenbridges_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sevenbridges
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sevenbridges
Bioc Package Browser https://code.bioconductor.org/browse/sevenbridges/
Package Short Url https://bioconductor.org/packages/sevenbridges/
Package Downloads Report Download Stats