Registration Open for Bioc2024

stageR

stageR: stage-wise analysis of high throughput gene expression data in R


Bioconductor version: Release (3.19)

The stageR package allows automated stage-wise analysis of high-throughput gene expression data. The method is published in Genome Biology at https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1277-0

Author: Koen Van den Berge and Lieven Clement

Maintainer: Koen Van den Berge <koen.vdberge at gmail.com>

Citation (from within R, enter citation("stageR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("stageR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("stageR")
stageR: stage-wise analysis of high-throughput gene expression data in R HTML R Script
Reference Manual PDF

Details

biocViews Software, StatisticalMethod
Version 1.26.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GNU General Public License version 3
Depends R (>= 3.4), SummarizedExperiment
Imports methods, stats
System Requirements
URL
See More
Suggests knitr, rmarkdown, BiocStyle, methods, Biobase, edgeR, limma, DEXSeq, testthat
Linking To
Enhances
Depends On Me rnaseqDTU
Imports Me
Suggests Me MethReg, satuRn
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package stageR_1.26.0.tar.gz
Windows Binary stageR_1.26.0.zip
macOS Binary (x86_64) stageR_1.26.0.tgz
macOS Binary (arm64) stageR_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/stageR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/stageR
Bioc Package Browser https://code.bioconductor.org/browse/stageR/
Package Short Url https://bioconductor.org/packages/stageR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.19 Source Archive