tidybulk

DOI: 10.18129/B9.bioc.tidybulk    

Brings transcriptomics to the tidyverse

Bioconductor version: Release (3.11)

This is a collection of utility functions that allow to perform exploration of and calculations to RNA sequencing data, in a modular, pipe-friendly and tidy fashion.

Author: Stefano Mangiola [aut, cre]

Maintainer: Stefano Mangiola <mangiolastefano at gmail.com>

Citation (from within R, enter citation("tidybulk")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tidybulk")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tidybulk")

 

HTML R Script Overview of the tidybulk package
PDF   Reference Manual
Text   LICENSE

Details

biocViews AssayDomain, Infrastructure, Software
Version 1.0.2
In Bioconductor since BioC 3.11 (R-4.0) (< 6 months)
License GPL-3
Depends R (>= 4.0.0)
Imports tibble, readr, dplyr, magrittr, tidyr, rlang, purrr, preprocessCore, stats, parallel, utils, lifecycle
LinkingTo
Suggests testthat, AnnotationDbi, BiocManager, Rsubread, e1071, edgeR, limma, org.Hs.eg.db, sva, GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, EGSEA, SummarizedExperiment, S4Vectors, ggplot2, widyr, clusterProfiler, msigdbr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tidybulk_1.0.2.tar.gz
Windows Binary tidybulk_1.0.2.zip
macOS 10.13 (High Sierra) tidybulk_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/tidybulk
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tidybulk
Package Short Url https://bioconductor.org/packages/tidybulk/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive

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