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tracktables

Build IGV tracks and HTML reports


Bioconductor version: Release (3.18)

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tracktables")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")
Creating IGV HTML reports with tracktables PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ReportWriting, Sequencing, Software
Version 1.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>= 3)
Depends R (>= 3.5.0)
Imports IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods
System Requirements
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Suggests knitr, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tracktables_1.36.0.tar.gz
Windows Binary tracktables_1.36.0.zip
macOS Binary (x86_64) tracktables_1.36.0.tgz
macOS Binary (arm64) tracktables_1.36.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tracktables
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tracktables
Bioc Package Browser https://code.bioconductor.org/browse/tracktables/
Package Short Url https://bioconductor.org/packages/tracktables/
Package Downloads Report Download Stats