viper

This is the released version of viper; for the devel version, see viper.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: Release (3.23)

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("viper")):

Mariano J Alvarez. viper: Virtual Inference of Protein-activity by Enriched Regulon analysis. doi:10.18129/B9.bioc.viper, R package version 1.46.0, https://bioconductor.org/packages/viper.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("viper")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")

Using VIPER	PDF	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version	1.46.0
In Bioconductor since	BioC 2.14 (R-3.1) (12.5 years)
License	file LICENSE
Depends	R (>= 2.14.0), Biobase, methods
Imports	mixtools, stats, parallel, e1071, KernSmooth
System Requirements
URL

Suggests	bcellViper
Linking To
Enhances
Depends On Me	aracne.networks, vulcan
Imports Me	diggit, diggitdata, RTN
Suggests Me	decoupleR, dorothea, easier, MethReg, MOMA, vulcandata
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	viper_1.46.0.tar.gz
Windows Binary (x86_64)	viper_1.46.0.zip
macOS Binary (big-sur-x86_64)	viper_1.46.0.tgz
macOS Binary (sonoma-arm64)	viper_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/viper
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/viper
Package Short Url	https://bioconductor.org/packages/viper/
Package Downloads Report	Download Stats