viper
Virtual Inference of Protein-activity by Enriched Regulon analysis
Bioconductor version: Release (3.19)
Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms
Author: Mariano J Alvarez <reef103 at gmail.com>
Maintainer: Mariano J Alvarez <reef103 at gmail.com>
Citation (from within R, enter
citation("viper")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("viper")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("viper")
Using VIPER | R Script | |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology |
Version | 1.38.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (10.5 years) |
License | file LICENSE |
Depends | R (>= 2.14.0), Biobase, methods |
Imports | mixtools, stats, parallel, e1071, KernSmooth |
System Requirements | |
URL |
See More
Suggests | bcellViper |
Linking To | |
Enhances | |
Depends On Me | vulcan, aracne.networks |
Imports Me | diggit, RTN, diggitdata |
Suggests Me | decoupleR, easier, MethReg, MOMA, dorothea, vulcandata |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | viper_1.38.0.tar.gz |
Windows Binary | viper_1.38.0.zip (64-bit only) |
macOS Binary (x86_64) | viper_1.38.0.tgz |
macOS Binary (arm64) | viper_1.38.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/viper |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/viper |
Bioc Package Browser | https://code.bioconductor.org/browse/viper/ |
Package Short Url | https://bioconductor.org/packages/viper/ |
Package Downloads Report | Download Stats |