SNPlocs.Hsapiens.dbSNP149.GRCh38
This is the released version of SNPlocs.Hsapiens.dbSNP149.GRCh38; for the devel version, see SNPlocs.Hsapiens.dbSNP149.GRCh38.
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3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5
SNP locations for Homo sapiens (dbSNP Build 149)
Bioconductor version: 3.23 · Package version: 0.99.21
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
Author: Hervé Pagès
Maintainer: H. Pagès <hpages at fredhutch.org>
Citation
From within R, enter citation("SNPlocs.Hsapiens.dbSNP149.GRCh38"):
Hervé Pagès. SNPlocs.Hsapiens.dbSNP149.GRCh38: SNP locations for Homo sapiens (dbSNP Build 149). doi:10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP149.GRCh38, R package version 0.99.21, https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP149.GRCh38.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SNPlocs.Hsapiens.dbSNP149.GRCh38")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 0.99.21 |
| License | Artistic-2.0 |
| Last updated | 2017-01-18 |
| In Bioconductor since | BioC 3.5 (R-3.4) (9 years) |
| Downloads rank | 736 of 928 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
| Package Short Url | https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP149.GRCh38/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | SNPlocs.Hsapiens.dbSNP149.GRCh38_0.99.21.tar.gz |
| Package Downloads Report | Download Stats |
Dependencies
Depends: BSgenome (>= 1.43.4)
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38