Bioconductor Developer Survey 2026 Now Open!

TxDb.Mmusculus.UCSC.mm39.knownGene

This is the released version of TxDb.Mmusculus.UCSC.mm39.knownGene; for the devel version, see TxDb.Mmusculus.UCSC.mm39.knownGene.

All Bioconductor versions of TxDb.Mmusculus.UCSC.mm39.knownGene

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Annotation package for TxDb object(s)

Bioconductor version: 3.23 · Package version: 3.22.0

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

DOI: 10.18129/B9.bioc.TxDb.Mmusculus.UCSC.mm39.knownGene

Citation

From within R, enter citation("TxDb.Mmusculus.UCSC.mm39.knownGene"):

Bioconductor Core Team, Bioconductor Package Maintainer. TxDb.Mmusculus.UCSC.mm39.knownGene: Annotation package for TxDb object(s). doi:10.18129/B9.bioc.TxDb.Mmusculus.UCSC.mm39.knownGene, R package version 3.22.0, https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm39.knownGene.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TxDb.Mmusculus.UCSC.mm39.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.

Details

Version3.22.0
LicenseArtistic-2.0
Last updated2025-10-06
In Bioconductor sinceBioC 3.17 (R-4.3) (3 years)
Downloads rank158 of 928
Source branchRELEASE_3_23
biocViewsAnnotationData, Genetics, Mus_musculus, TxDb
Package Short Url https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm39.knownGene/

Documentation

Reference ManualPDF

Download

Follow the installation instructions to use this package in your R session.

Source packageTxDb.Mmusculus.UCSC.mm39.knownGene_3.22.0.tar.gz
Package Downloads ReportDownload Stats
Dependencies

Depends: GenomicFeatures

Imports: AnnotationDbi

Reverse dependencies

Suggests Me (2): annotatr, GRaNIE