HelloRangesData

DOI: 10.18129/B9.bioc.HelloRangesData    

Data for the HelloRanges tutorial vignette

Bioconductor version: Release (3.7)

Provides the data that were used in the bedtools tutorial by Aaron Quinlan (http://quinlanlab.org/tutorials/bedtools/bedtools.html). Includes a subset of the DnaseI hypersensitivity data from "Maurano et al. Systematic Localization of Common Disease-Associated Variation in Regulatory DNA. Science. 2012. Vol. 337 no. 6099 pp. 1190-1195." The rest of the tracks were originally downloaded from the UCSC table browser. See the HelloRanges vignette for a port of the bedtools tutorial to R.

Author: Michael Lawrence

Maintainer: Michael Lawrence <michafla at gene.com>

Citation (from within R, enter citation("HelloRangesData")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HelloRangesData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HelloRangesData")

 

PDF R Script HelloRanges Example Data
PDF   Reference Manual

Details

biocViews ExperimentData, SequencingData
Version 1.6.0
License GPL (>= 2)
Depends
Imports
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me HelloRanges, plyranges
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HelloRangesData_1.6.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HelloRangesData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HelloRangesData
Package Short Url http://bioconductor.org/packages/HelloRangesData/
Package Downloads Report Download Stats

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