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KEGGdzPathwaysGEO

KEGG Disease Datasets from GEO


Bioconductor version: Release (3.18)

This is a collection of 24 data sets for which the phenotype is a disease with a corresponding pathway in the KEGG database.This collection of datasets were used as gold standard in comparing gene set analysis methods by the PADOG package.

Author: Gaurav Bhatti, Adi L. Tarca

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Citation (from within R, enter citation("KEGGdzPathwaysGEO")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGdzPathwaysGEO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ExperimentData, GEO, MicroarrayData
Version 1.40.0
License GPL-2
Depends R (>= 2.13.0)
Imports Biobase, BiocGenerics
System Requirements
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Suggests
Linking To
Enhances
Depends On Me PADOG
Imports Me GSEABenchmarkeR
Suggests Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGdzPathwaysGEO_1.40.0.tar.gz
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macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/KEGGdzPathwaysGEO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGdzPathwaysGEO
Package Short Url https://bioconductor.org/packages/KEGGdzPathwaysGEO/
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