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MMAPPR2data

Sample Data for MMAPPR2


Bioconductor version: Release (3.18)

Contains data for illustration purposes in the MMAPPR2 package, namely simulated BAM files containing RNA-Seq data for a mutation in the slc24a5 gene, taken from the GRCz11 genome. Also contains reference sequence and annotation files for the region.

Author: Kyle Johnsen [aut], Jonathon Hill [cre]

Maintainer: Jonathon Hill <jhill at byu.edu>

Citation (from within R, enter citation("MMAPPR2data")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MMAPPR2data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MMAPPR2data")
Using MMAPPR2data Resources HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Danio_rerio_Data, ExperimentData, Genome, RNASeqData, SequencingData
Version 1.16.0
License GPL-3
Depends R (>= 3.6.0)
Imports Rsamtools
System Requirements
URL https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3613585/ https://github.com/kjohnsen/MMAPPR2
See More
Suggests knitr, rmarkdown, BiocStyle, roxygen2, seqinr, readr
Linking To
Enhances MMAPPR2
Depends On Me
Imports Me
Suggests Me MMAPPR2
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MMAPPR2data_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/MMAPPR2data
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MMAPPR2data
Package Short Url https://bioconductor.org/packages/MMAPPR2data/
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