ObMiTi

This is the released version of ObMiTi; for the devel version, see ObMiTi.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Ob/ob Mice Data on Normal and High Fat Diet

Bioconductor version: Release (3.23)

The package provide RNA-seq count for 2 strains of mus musclus; Wild type and Ob/Ob. Each strain was divided into two groups, and each group received either chow diet or high fat diet. RNA expression was measured after 20 weeks in 7 tissues.

Author: Omar Elashkar [aut, cre] ORCID: 0000-0002-5505-778X , Mahmoud Ahmed [aut] ORCID: 0000-0002-4377-6541

Maintainer: Omar Elashkar <omar.i.elashkar at gmail.com>

Citation (from within R, enter citation("ObMiTi")):

Omar Elashkar, Mahmoud Ahmed. ObMiTi: Ob/ob Mice Data on Normal and High Fat Diet. doi:10.18129/B9.bioc.ObMiTi, R package version 1.20.0, https://bioconductor.org/packages/ObMiTi.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ObMiTi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ObMiTi")

Using ObMiTi	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, GEO, RNASeqData
Version	1.20.0
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	GPL-3
Depends	R (>= 4.1), SummarizedExperiment, ExperimentHub
Imports
System Requirements
URL	https://github.com/OmarElAshkar/ObMiTi
Bug Reports	https://github.com/OmarElAshkar/ObMiTi/issues

Suggests	knitr, rmarkdown, BiocManager, GenomicFeatures, S4Vectors, devtools, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ObMiTi_1.20.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ObMiTi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ObMiTi
Package Short Url	https://bioconductor.org/packages/ObMiTi/
Package Downloads Report	Download Stats