STexampleData

This is the released version of STexampleData; for the devel version, see STexampleData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Bioconductor version: Release (3.23)

Collection of spatial transcriptomics datasets stored in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.

Author: Lukas M. Weber [aut, cre] ORCID: 0000-0002-3282-1730 , Yixing E. Dong [aut] ORCID: 0009-0003-5115-5686

Maintainer: Lukas M. Weber <weberlm3 at gmail.com>

Citation (from within R, enter citation("STexampleData")):

Lukas M. Weber, Yixing E. Dong. STexampleData: Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format. doi:10.18129/B9.bioc.STexampleData, R package version 1.20.1, https://bioconductor.org/packages/STexampleData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STexampleData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STexampleData")

STexampleData overview	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData
Version	1.20.1
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	MIT + file LICENSE
Depends	ExperimentHub, SingleCellExperiment, SpatialExperiment
Imports	utils
System Requirements
URL	https://github.com/lmweber/STexampleData
Bug Reports	https://github.com/lmweber/STexampleData/issues

Suggests	BiocStyle, knitr, rmarkdown, BumpyMatrix, HDF5Array
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	Battlefield, BulkSignalR, escheR, ggsc, ggspavis, nnSVG, poem, smoothclust, spatialSimGP, spoon, SpotSweeper, SVP, tpSVG
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	STexampleData_1.20.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/STexampleData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/STexampleData
Package Short Url	https://bioconductor.org/packages/STexampleData/
Package Downloads Report	Download Stats