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signatureSearchData

This is the released version of signatureSearchData; for the devel version, see signatureSearchData.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

Datasets for signatureSearch package


Bioconductor version: Release (3.23)

CMAP/LINCS hdf5 databases and other annotations used for signatureSearch software package.

Author: Yuzhu Duan <yduan004 at ucr.edu>, Brendan Gongol <bgong001 at ucr.edu>, Thomas Girke <thomas.girke at ucr.edu>

Maintainer: Brendan Gongol <bgong001 at ucr.edu>

Citation (from within R, enter citation("signatureSearchData")):

Yuzhu Duan, Brendan Gongol, Thomas Girke. signatureSearchData: Datasets for signatureSearch package. doi:10.18129/B9.bioc.signatureSearchData, R package version 1.26.0, https://bioconductor.org/packages/signatureSearchData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("signatureSearchData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("signatureSearchData")
signatureSearchData HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews ExperimentData, ExperimentHub, ExpressionData
Version1.26.0
In Bioconductor sinceBioC 3.10 (R-3.6) (7 years)
License Artistic-2.0
Depends R (>= 3.6)
Imports ExperimentHub, utils, affy, limma, Biobase, magrittr, dplyr, R.utils, stats, rhdf5
System Requirements
URL
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me DFD, signatureSearch
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package signatureSearchData_1.26.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/signatureSearchData
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/signatureSearchData
Package Short Url https://bioconductor.org/packages/signatureSearchData/
Package Downloads ReportDownload Stats