highthroughputassays

This is the released version of highthroughputassays; for the devel version, see highthroughputassays.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Using Bioconductor with High Throughput Assays

Bioconductor version: Release (3.23)

The workflow illustrates use of the flow cytometry packages to load, transform and visualize the flow data and gate certain populations in the dataset. The workflow loads the `flowCore`, `flowStats` and `flowWorkspace` packages and its dependencies. It loads the ITN data with 15 samples, each of which includes, in addition to FSC and SSC, 5 fluorescence channels: CD3, CD4, CD8, CD69 and HLADR.

Author: Bioconductor Package Maintainer [aut, cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("highthroughputassays")):

Bioconductor Package Maintainer. highthroughputassays: Using Bioconductor with High Throughput Assays. doi:10.18129/B9.bioc.highthroughputassays, R package version 1.36.0, https://bioconductor.org/packages/highthroughputassays.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("highthroughputassays")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("highthroughputassays")

Using Bioconductor with High Throughput Assays

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Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ImmunoOncologyWorkflow, ProteomicsWorkflow, Workflow
Version	1.36.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	Artistic-2.0
Depends	R (>= 3.3.0), flowCore, flowStats, flowWorkspace
Imports
System Requirements
URL	https://www.bioconductor.org/help/workflows/highthroughputassays/

Suggests	knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	highthroughputassays_1.36.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/highthroughputassays
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/highthroughputassays
Package Short Url	https://bioconductor.org/packages/highthroughputassays/
Package Downloads Report	Download Stats