scanMiRData

This is the released version of scanMiRData; for the devel version, see scanMiRData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14

miRNA Affinity models for the scanMiR package

Bioconductor version: Release (3.23)

This package contains companion data to the scanMiR package. It contains `KdModel` (miRNA 12-mer binding affinity models) collections corresponding to all human, mouse and rat mirbase miRNAs. See the scanMiR package for details.

Author: Pierre-Luc Germain [cre, aut] ORCID: 0000-0003-3418-4218 , Michael Soutschek [aut], Fridolin Gross [aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("scanMiRData")):

Pierre-Luc Germain, Michael Soutschek, Fridolin Gross. scanMiRData: miRNA Affinity models for the scanMiR package. doi:10.18129/B9.bioc.scanMiRData, R package version 1.18.0, https://bioconductor.org/packages/scanMiRData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("scanMiRData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scanMiRData")

scanMiRData	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, Rattus_norvegicus_Data, miRNAData
Version	1.18.0
In Bioconductor since	BioC 3.14 (R-4.1) (5 years)
License	GPL-3
Depends	R (>= 4.0)
Imports	scanMiR, utils
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me	scanMiRApp
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	scanMiRData_1.18.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/scanMiRData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/scanMiRData
Package Short Url	https://bioconductor.org/packages/scanMiRData/
Package Downloads Report	Download Stats