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Revision: 117167
Author: m.lawrence
Date: 2016-05-05T22:35:35+00:00
Paths:
Modified  /trunk/madman/Rpacks/rtracklayer/configure
updated configure script
Revision: 117166
Author: m.lawrence
Date: 2016-05-05T22:35:16+00:00
Paths:
Modified  /trunk/madman/Rpacks/rtracklayer/configure.ac
attempt to find openssl automatically on the Mac
Revision: 117165
Author: n.malani
Date: 2016-05-05T22:29:12+00:00
Paths:
Modified  /trunk/madman/Rpacks/hiReadsProcessor/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiReadsProcessor/NAMESPACE
Modified  /trunk/madman/Rpacks/hiReadsProcessor/NEWS
Modified  /trunk/madman/Rpacks/hiReadsProcessor/R/hiReadsProcessor.R
Deleted  /trunk/madman/Rpacks/hiReadsProcessor/inst/extdata/FLX_sample_run/sampleInfo.xls
Added  /trunk/madman/Rpacks/hiReadsProcessor/inst/extdata/FLX_sample_run/sampleInfo.xlsx
Modified  /trunk/madman/Rpacks/hiReadsProcessor/inst/tests/runTests.R
Modified  /trunk/madman/Rpacks/hiReadsProcessor/inst/tests/tests/test_coreFeatures.R
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/addFeature.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/addListNameToReads.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/annotateSites.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/blatListedSet.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/blatSeqs.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/chunkize.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/clusterSites.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/crossOverCheck.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/dereplicateReads.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/doRCtest.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/extractFeature.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/extractSeqs.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/findAndRemoveVector.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/findAndTrimSeq.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/findBarcodes.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/findIntegrations.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/findLTRs.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/findLinkers.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/findPrimers.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/findVector.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/getIntegrationSites.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/getSectorsForSamples.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/getSonicAbund.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/hiReadsProcessor.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/isuSites.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/otuSites.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/pairUpAlignments.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/pairwiseAlignSeqs.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/primerIDAlignSeqs.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/psl.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/pslCols.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/pslToRangedObject.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/read.BAMasPSL.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/read.SeqFolder.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/read.blast8.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/read.psl.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/read.sampleInfo.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/read.seqsFromSector.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/removeReadsWithNs.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/replicateReads.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/sampleSummary.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/seqProps.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/splitByBarcode.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/splitSeqsToFiles.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/startgfServer.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/trimSeqs.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/troubleshootLinkers.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/vpairwiseAlignSeqs.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/write.listedDNAStringSet.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/man/write.psl.Rd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/vignettes/Tutorial.R
Modified  /trunk/madman/Rpacks/hiReadsProcessor/vignettes/Tutorial.Rmd
Modified  /trunk/madman/Rpacks/hiReadsProcessor/vignettes/Tutorial.html
Modified  /trunk/madman/Rpacks/hiReadsProcessor/vignettes/Tutorial.md
    * Using readxl to import sampleInfo excel file
    * Minor code improvements for merging internal objects and cleaning data
    * Removed parameter interactive in read.SeqFolder in favor of base::interactive()
    * findOverlap calls updated to use ignoreRedundant & ignoreSelf
    * splitSeqsToFiles receives outDir parameter
Revision: 117164
Author: t.backman
Date: 2016-05-05T22:28:22+00:00
Paths:
Modified  /trunk/madman/Rpacks/bioassayR/DESCRIPTION
fixed version

From: Tyler Backman <tyler.backman@ucr.edu>
Revision: 117163
Author: t.backman
Date: 2016-05-05T22:25:15+00:00
Paths:
Modified  /trunk/madman/Rpacks/bioassayR/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioassayR/NAMESPACE
Added  /trunk/madman/Rpacks/bioassayR/R/bayesian-cross-reactivity.R
Added  /trunk/madman/Rpacks/bioassayR/man/crossReactivityProbability.Rd
Modified  /trunk/madman/Rpacks/bioassayR/man/targetSelectivity.Rd
Added  /trunk/madman/Rpacks/bioassayR/tests/testthat/test_crossReactivityProbability.R
Merge branch 'master' into devel

* master:
  added cross reactivity function
  fixed scores to allow non-integer

From: Tyler Backman <tyler.backman@ucr.edu>
Revision: 117162
Author: t.silva
Date: 2016-05-05T21:55:17+00:00
Paths:
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGAvisualize.R
bug fix

From: tiagochst <tiagochst@gmail.com>
Revision: 117160
Author: v.obenchain
Date: 2016-05-05T21:22:53+00:00
Paths:
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/R/coordinate-mapping-methods.R
Modified  /trunk/madman/Rpacks/GenomicFeatures/inst/unitTests/test_coordinate-mapping-methods.R
Modified  /trunk/madman/Rpacks/GenomicFeatures/man/coordinate-mapping-methods.Rd
add 'intronJunctions' argument to
mapToTranscripts,GenomicRanges,GRangesList-method
Revision: 117158
Author: l.collado-torres
Date: 2016-05-05T20:12:51+00:00
Paths:
Modified  /trunk/madman/Rpacks/regionReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/regionReport/NAMESPACE
Modified  /trunk/madman/Rpacks/regionReport/NEWS
Deleted  /trunk/madman/Rpacks/regionReport/R/defunct.R
Deleted  /trunk/madman/Rpacks/regionReport/man/regionReport-defunct.Rd
v1.7.2 -- dropped defunct functions
Revision: 117157
Author: l.collado-torres
Date: 2016-05-05T20:10:17+00:00
Paths:
Modified  /trunk/madman/Rpacks/derfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinder/NAMESPACE
Modified  /trunk/madman/Rpacks/derfinder/NEWS
Deleted  /trunk/madman/Rpacks/derfinder/R/defunct.R
Deleted  /trunk/madman/Rpacks/derfinder/man/derfinder-defunct.Rd
v1.7.1 -- dropped defunct functions
Revision: 117156
Author: d.tenenbaum
Date: 2016-05-05T17:35:02+00:00
Paths:
Modified  /trunk/madman/Rpacks/biocViews/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocViews/R/repository.R
be more careful extracting vignette titles
Revision: 117155
Author: s.neumann
Date: 2016-05-05T16:50:42+00:00
Paths:
Modified  /trunk/madman/Rpacks/mzR/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzR/NEWS
Modified  /trunk/madman/Rpacks/mzR/src/Makevars
Modified  /trunk/madman/Rpacks/mzR/src/boost/regex/src/regex_raw_buffer.cpp
revert added compiler switch, and fixed boost code instead to get rid of warnings
Revision: 117152
Author: l.gatto
Date: 2016-05-05T15:59:38+00:00
Paths:
Modified  /trunk/madman/Rpacks/MSnbase/man/readMSnSet.Rd
fix conflicts

From: Laurent <lg390@cam.ac.uk>
Revision: 117151
Author: l.gatto
Date: 2016-05-05T15:59:30+00:00
Paths:
Modified  /trunk/madman/Rpacks/MSnbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnbase/NEWS
Modified  /trunk/madman/Rpacks/MSnbase/R/readMSnSet.R
Modified  /trunk/madman/Rpacks/MSnbase/man/readMSnSet.Rd
Modified  /trunk/madman/Rpacks/MSnbase/tests/testthat/test_io.R
fix conflicts

From: Laurent <lg390@cam.ac.uk>
Revision: 117148
Author: j.paulson
Date: 2016-05-05T13:12:56+00:00
Paths:
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
updated description
Revision: 117147
Author: j.paulson
Date: 2016-05-05T13:09:17+00:00
Paths:
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
update description
Revision: 117145
Author: k.mezhoud
Date: 2016-05-05T10:44:41+00:00
Paths:
Modified  /trunk/madman/Rpacks/canceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/canceR/NAMESPACE
Modified  /trunk/madman/Rpacks/canceR/README.md
Deleted  /trunk/madman/Rpacks/canceR/inst/extdata/canceR.pdf
rm /inst/extdata/canceR.pdf

From: kmezhoud <kmezhoud@gmail.com>
Revision: 117144
Author: s.gibb
Date: 2016-05-05T10:40:38+00:00
Paths:
Modified  /trunk/madman/Rpacks/cleaver/README.md
update package url

From: Sebastian Gibb <mail@sebastiangibb.de>
Revision: 117142
Author: smyth
Date: 2016-05-05T09:03:15+00:00
Paths:
Modified  /trunk/madman/Rpacks/limma/DESCRIPTION
Modified  /trunk/madman/Rpacks/limma/R/geneset-fry.R
Modified  /trunk/madman/Rpacks/limma/R/squeezeVar.R
Modified  /trunk/madman/Rpacks/limma/inst/doc/changelog.txt
Modified  /trunk/madman/Rpacks/limma/man/roast.Rd
 5 May 2016: limma 3.29.2

- minor speed improvements for squeezeVar() and fry().
Revision: 117139
Author: mtmorgan
Date: 2016-05-05T01:55:46+00:00
Paths:
Modified  /trunk/madman/Rpacks/BiocInstaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocInstaller/R/zzz.R
typo in .onLoad prevented reading online dcf
Revision: 117134
Author: d.tenenbaum
Date: 2016-05-04T23:11:26+00:00
Paths:
Modified  /trunk/madman/Rpacks/BiocInstaller/inst/scripts/BiocInstaller.dcf
update comment
Revision: 117131
Author: t.silva
Date: 2016-05-04T23:04:38+00:00
Paths:
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGAvisualize.R
fixing wrong merge

From: tiagochst <tiagochst@gmail.com>
Revision: 117130
Author: d.tenenbaum
Date: 2016-05-04T23:02:42+00:00
Paths:
Modified  /trunk/madman/Rpacks/BiocInstaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocInstaller/inst/scripts/BiocInstaller.dcf
upgrade dcf to release values
Revision: 117129
Author: v.obenchain
Date: 2016-05-04T22:52:24+00:00
Paths:
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/R/makeTxDbPackage.R
add checks for 'provider' and 'providerVersion' arguments
Revision: 117127
Author: v.obenchain
Date: 2016-05-04T22:44:48+00:00
Paths:
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/R/makeTxDbPackage.R
Modified  /trunk/madman/Rpacks/GenomicFeatures/man/makeTxDbPackage.Rd
modifications to makeTxDbPackage():

- add 'provider' and 'providerVersion' arguments
- SOURCEURL always gets from 'Source Url' field in metadata table
Revision: 117121
Author: l.collado-torres
Date: 2016-05-04T22:11:36+00:00
Paths:
Modified  /trunk/madman/Rpacks/regionReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/regionReport/R/utils.R
v1.7.1 -- fix a bug in load_install()
Revision: 117120
Author: d.tenenbaum
Date: 2016-05-04T22:10:36+00:00
Paths:
Modified  /trunk/madman/Rpacks/BiocInstaller/inst/scripts/BiocInstaller.dcf
fill in missing value for 3.2
Revision: 117118
Author: h.wu
Date: 2016-05-04T21:03:59+00:00
Paths:
Modified  /trunk/madman/Rpacks/DSS/R/estDispersion.util.R
Modified  /trunk/madman/Rpacks/DSS/R/waldTest.R
Modified RNA-seq part, so that it'll work when there's only one rep from a condition
Revision: 117117
Author: l.gatto
Date: 2016-05-04T20:11:46+00:00
Paths:
Modified  /trunk/madman/Rpacks/MSnbase/NEWS
Modified  /trunk/madman/Rpacks/MSnbase/R/utils.R
Modified  /trunk/madman/Rpacks/MSnbase/man/grepEcols.Rd
fix conflict
Revision: 117116
Author: l.gatto
Date: 2016-05-04T20:11:37+00:00
Paths:
Modified  /trunk/madman/Rpacks/MSnbase/R/readMSData.R
Fix wrong indexing in readMSdata, msLevel==1
Revision: 117115
Author: l.gatto
Date: 2016-05-04T20:11:28+00:00
Paths:
Modified  /trunk/madman/Rpacks/MSnbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnbase/NEWS
fix conflict
Revision: 117113
Author: v.obenchain
Date: 2016-05-04T19:41:36+00:00
Paths:
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/man/makeTxDbFromBiomart.Rd
reduce runtime of makeTxDbFromBiomart man page:

These examples have been timing out in R CMD check for several months.
makeTxDbFromBiomart() is called 4 times in the man page and several times
from multiple vignettes (amply tested). Three of the four calls in the
man page have been wrapped with if (interactive()).
Revision: 117112
Author: v.kiselev
Date: 2016-05-04T19:30:15+00:00
Paths:
Modified  /trunk/madman/Rpacks/SC3/DESCRIPTION
Modified  /trunk/madman/Rpacks/SC3/NAMESPACE
Modified  /trunk/madman/Rpacks/SC3/R/shiny-funcs.R
Modified  /trunk/madman/Rpacks/SC3/R/shiny.R
Added  /trunk/madman/Rpacks/SC3/man/StabilityIndex.Rd
add stability index; changed plotting of the outliers back to the fixed height
Revision: 117110
Author: j.paulson
Date: 2016-05-04T18:28:59+00:00
Paths:
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
updating authorship
Revision: 117109
Author: h.corradabravo
Date: 2016-05-04T18:26:42+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizrServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrServer/R/IndexedArray-class.R
Modified  /trunk/madman/Rpacks/epivizrServer/R/Queue-class.R
Remove all finalizers

* Remove 'Queue' finalizer
* Remove 'IndexedArray' finalizer
* Version bump v1.1.1

From: Hector Corrada Bravo <hcorrada@gmail.com>
Revision: 117107
Author: j.paulson
Date: 2016-05-04T15:05:54+00:00
Paths:
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
update description
Revision: 117106
Author: l.shepherd
Date: 2016-05-04T14:49:53+00:00
Paths:
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/R/transcriptLengths.R
Modified  /trunk/madman/Rpacks/GenomicFeatures/man/transcriptLengths.Rd
Update transcriptLengths()

- Add ... to argument list
- Pass ... on to accessor functions
Revision: 117104
Author: v.obenchain
Date: 2016-05-04T14:17:07+00:00
Paths:
Modified  /trunk/madman/Rpacks/AnnotationHubData/R/makeEnsemblFasta.R
Modified  /trunk/madman/Rpacks/AnnotationHubData/R/makeEnsemblTwoBit.R
Modified  /trunk/madman/Rpacks/AnnotationHubData/R/updateResources.R
use ID as name instead of full header in ensemblFastaToTwoBitFile()
Revision: 117103
Author: j.paulson
Date: 2016-05-04T14:10:10+00:00
Paths:
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
Added  /trunk/madman/Rpacks/pandaR/inst/CITATION
add citation
Revision: 117101
Author: u.bodenhofer
Date: 2016-05-04T10:26:16+00:00
Paths:
Deleted  /trunk/madman/Rpacks/procoil/data/PrOCoilModel.rda
Deleted  /trunk/madman/Rpacks/procoil/data/PrOCoilModelBA.rda
removed unnecessary files
Revision: 117100
Author: j.rainer
Date: 2016-05-04T10:26:09+00:00
Paths:
Modified  /trunk/madman/Rpacks/ensembldb/inst/NEWS
Just add a new NEWS

From: jotsetung <johannes.rainer@gmail.com>
Revision: 117099
Author: j.rainer
Date: 2016-05-04T09:49:02+00:00
Paths:
Modified  /trunk/madman/Rpacks/ensembldb/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensembldb/inst/NEWS
Bump version to 1.5.1

From: jotsetung <johannes.rainer@gmail.com>
Revision: 117098
Author: j.rainer
Date: 2016-05-04T09:48:54+00:00
Paths:
Modified  /trunk/madman/Rpacks/ensembldb/R/Methods.R
Modified  /trunk/madman/Rpacks/ensembldb/R/dbhelpers.R
Modified  /trunk/madman/Rpacks/ensembldb/R/select-methods.R
Modified  /trunk/madman/Rpacks/ensembldb/inst/NEWS
Modified  /trunk/madman/Rpacks/ensembldb/inst/unitTests/test_Functionality.R
Modified  /trunk/madman/Rpacks/ensembldb/inst/unitTests/test_select.R
Modified  /trunk/madman/Rpacks/ensembldb/man/EnsDb-AnnotationDbi.Rd
Modified  /trunk/madman/Rpacks/ensembldb/man/EnsDb-class.Rd
Modified  /trunk/madman/Rpacks/ensembldb/man/EnsDb-exonsBy.Rd
Modified  /trunk/madman/Rpacks/ensembldb/vignettes/ensembldb.Rmd
Modified  /trunk/madman/Rpacks/ensembldb/vignettes/ensembldb.org
Add support for column "tx_name"

o "tx_name" can now be provided with the columns argument of all
  methods. The methods return the tx_id from the database.

From: jotsetung <johannes.rainer@gmail.com>
Revision: 117095
Author: a.gutierrez-sacristan
Date: 2016-05-04T07:05:41+00:00
Paths:
Modified  /trunk/madman/Rpacks/psygenet2r/DESCRIPTION
Modified  /trunk/madman/Rpacks/psygenet2r/R/pantherGraphicCorrect.R
Modified  /trunk/madman/Rpacks/psygenet2r/R/psygenetGene.R
Modified  /trunk/madman/Rpacks/psygenet2r/man/pantherGraphic-methods.Rd
Modified  /trunk/madman/Rpacks/psygenet2r/man/psygenetGene-methods.Rd
Updated examples on psygenetGene and pantherGraphic.
Revision: 117091
Author: smyth
Date: 2016-05-04T02:49:38+00:00
Paths:
Modified  /trunk/madman/Rpacks/limma/man/roast.Rd
Minor documentation correction.
Revision: 117089
Author: smyth
Date: 2016-05-04T00:53:56+00:00
Paths:
Modified  /trunk/madman/Rpacks/limma/DESCRIPTION
Modified  /trunk/madman/Rpacks/limma/R/alias2Symbol.R
Modified  /trunk/madman/Rpacks/limma/R/geneset-fry.R
Modified  /trunk/madman/Rpacks/limma/R/geneset-romer.R
Modified  /trunk/madman/Rpacks/limma/R/lmEffects.R
Modified  /trunk/madman/Rpacks/limma/R/lmfit.R
Modified  /trunk/madman/Rpacks/limma/R/squeezeVar.R
Modified  /trunk/madman/Rpacks/limma/inst/doc/changelog.txt
Modified  /trunk/madman/Rpacks/limma/man/alias2Symbol.Rd
Modified  /trunk/madman/Rpacks/limma/man/fitted.MArrayLM.Rd
 4 May 2016: limma 3.27.21

- unnecesary argument 'design' removed from fitted.MArrayLM.

- bug fix to fry() with robust=TRUE.

- bug fix to alias2Symbol() with expand.symbol=TRUE.
Revision: 117088
Author: mer36
Date: 2016-05-03T23:41:16+00:00
Paths:
Modified  /trunk/madman/Rpacks/crlmm/DESCRIPTION
Also added some new plotting options and updated version number
Revision: 117086
Author: h.zare
Date: 2016-05-03T22:52:03+00:00
Paths:
Modified  /trunk/madman/Rpacks/SamSPECTRAL/DESCRIPTION
email updated
Revision: 117085
Author: h.zare
Date: 2016-05-03T22:50:26+00:00
Paths:
Modified  /trunk/madman/Rpacks/Clomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clomial/vignettes/Clonal_decomposition_by_Clomial.Rnw
email updated
Revision: 117083
Author: hpages
Date: 2016-05-03T21:52:41+00:00
Paths:
Modified  /trunk/madman/Rpacks/BSgenome/R/available.genomes.R
fix getBSgenome() regression introduced at commit 116964
Revision: 117082
Author: d.tenenbaum
Date: 2016-05-03T21:34:18+00:00
Paths:
Modified  /trunk/madman/Rpacks/BiocInstaller/R/zzz.R
set BIOC_VERSION to 3.4 (3.3 branch has been created)
Revision: 117081
Author: d.tenenbaum
Date: 2016-05-03T21:30:45+00:00
Paths:
Modified  /trunk/madman/Rpacks/ABAEnrichment/DESCRIPTION
Modified  /trunk/madman/Rpacks/ABSSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ABarray/DESCRIPTION
Modified  /trunk/madman/Rpacks/ACME/DESCRIPTION
Modified  /trunk/madman/Rpacks/ADaCGH2/DESCRIPTION
Modified  /trunk/madman/Rpacks/AGDEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/AIMS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ALDEx2/DESCRIPTION
Modified  /trunk/madman/Rpacks/ARRmNormalization/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASEB/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASGSCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASSET/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASSIGN/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyCompatible/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyExpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyRNADegradation/DESCRIPTION
Modified  /trunk/madman/Rpacks/AgiMicroRna/DESCRIPTION
Modified  /trunk/madman/Rpacks/AllelicImbalance/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnalysisPageServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/AneuFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationForge/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationFuncs/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationHub/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayExpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayExpressHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayTV/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/AtlasRDF/DESCRIPTION
Modified  /trunk/madman/Rpacks/BAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BADER/DESCRIPTION
Modified  /trunk/madman/Rpacks/BAGS/DESCRIPTION
Modified  /trunk/madman/Rpacks/BBCAnalyzer/DESCRIPTION
Modified  /trunk/madman/Rpacks/BCRANK/DESCRIPTION
Modified  /trunk/madman/Rpacks/BEAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/BEclear/DESCRIPTION
Modified  /trunk/madman/Rpacks/BGmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/BHC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BRAIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/BSgenome/DESCRIPTION
Modified  /trunk/madman/Rpacks/BUS/DESCRIPTION
Modified  /trunk/madman/Rpacks/BadRegionFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/BaseSpaceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Basic4Cseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BasicSTARRseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BatchQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BayesPeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/BeadDataPackR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BgeeDB/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiGGR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiRewire/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BicARE/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioMVCClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioSeqClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/Biobase/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocCaseStudies/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocGenerics/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocInstaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocParallel/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocStyle/DESCRIPTION
Modified  /trunk/madman/Rpacks/Biostrings/DESCRIPTION
Modified  /trunk/madman/Rpacks/BitSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrainStars/DESCRIPTION
Modified  /trunk/madman/Rpacks/BridgeDbR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrowserViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrowserVizDemo/DESCRIPTION
Modified  /trunk/madman/Rpacks/BubbleTree/DESCRIPTION
Modified  /trunk/madman/Rpacks/BufferedMatrix/DESCRIPTION
Modified  /trunk/madman/Rpacks/BufferedMatrixMethods/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAFE/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAGEr/DESCRIPTION
Modified  /trunk/madman/Rpacks/CALIB/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAMERA/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAnD/DESCRIPTION
Modified  /trunk/madman/Rpacks/CFAssay/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGEN/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHcall/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHnormaliter/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHregions/DESCRIPTION
Modified  /trunk/madman/Rpacks/CHRONOS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CINdex/DESCRIPTION
Modified  /trunk/madman/Rpacks/CMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNAnorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNEr/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORdt/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORfeeder/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORfuzzy/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORode/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNPBayes/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVPanelizer/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVrd2/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/CODEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/COHCAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/COMPASS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CONFESS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CORREP/DESCRIPTION
Modified  /trunk/madman/Rpacks/COSNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/CRISPRseek/DESCRIPTION
Modified  /trunk/madman/Rpacks/CRImage/DESCRIPTION
Modified  /trunk/madman/Rpacks/CSAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CSSP/DESCRIPTION
Modified  /trunk/madman/Rpacks/CancerMutationAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/Cardinal/DESCRIPTION
Modified  /trunk/madman/Rpacks/Category/DESCRIPTION
Modified  /trunk/madman/Rpacks/CausalR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CellNOptR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CexoR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChAMP/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPComp/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPXpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPpeakAnno/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPseeker/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPsim/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChemmineOB/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChemmineR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Chicago/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChromHeatMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/ClassifyR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clonality/DESCRIPTION
Modified  /trunk/madman/Rpacks/ClusterSignificance/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoCiteStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoGAPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoRegNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/CompGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/ComplexHeatmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/ConsensusClusterPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/CopyNumber450k/DESCRIPTION
Modified  /trunk/madman/Rpacks/CopywriteR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CorMut/DESCRIPTION
Modified  /trunk/madman/Rpacks/Cormotif/DESCRIPTION
Modified  /trunk/madman/Rpacks/CountClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoverageView/DESCRIPTION
Modified  /trunk/madman/Rpacks/CrispRVariants/DESCRIPTION
Modified  /trunk/madman/Rpacks/DAPAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DART/DESCRIPTION
Modified  /trunk/madman/Rpacks/DBChIP/DESCRIPTION
Modified  /trunk/madman/Rpacks/DChIPRep/DESCRIPTION
Modified  /trunk/madman/Rpacks/DECIPHER/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEDS/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEFormats/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGreport/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DESeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DESeq2/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEXSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DFP/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRcaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRcate/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRforPairs/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNABarcodes/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNAcopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNAshapeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DOQTL/DESCRIPTION
Modified  /trunk/madman/Rpacks/DOSE/DESCRIPTION
Modified  /trunk/madman/Rpacks/DRIMSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DSS/DESCRIPTION
Modified  /trunk/madman/Rpacks/DTA/DESCRIPTION
Modified  /trunk/madman/Rpacks/DeMAND/DESCRIPTION
Modified  /trunk/madman/Rpacks/DeconRNASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DiffBind/DESCRIPTION
Modified  /trunk/madman/Rpacks/DiffLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/DirichletMultinomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/DriverNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/DrugVsDisease/DESCRIPTION
Modified  /trunk/madman/Rpacks/DupChecker/DESCRIPTION
Modified  /trunk/madman/Rpacks/DynDoc/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBImage/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSeqHMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBarrays/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBcoexpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/EDASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/EDDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/EGAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/EGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ELBOW/DESCRIPTION
Modified  /trunk/madman/Rpacks/EMDomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENCODExplorer/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENVISIONQuery/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/EWCE/DESCRIPTION
Modified  /trunk/madman/Rpacks/EasyqpcR/DESCRIPTION
Modified  /trunk/madman/Rpacks/EmpiricalBrownsMethod/DESCRIPTION
Modified  /trunk/madman/Rpacks/EnrichedHeatmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/EnrichmentBrowser/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExiMiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExperimentHub/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExperimentHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExpressionAtlas/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExpressionView/DESCRIPTION
Modified  /trunk/madman/Rpacks/FEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/FGNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/FISHalyseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/FRGEpistasis/DESCRIPTION
Modified  /trunk/madman/Rpacks/FamAgg/DESCRIPTION
Modified  /trunk/madman/Rpacks/FindMyFriends/DESCRIPTION
Modified  /trunk/madman/Rpacks/FlowRepositoryR/DESCRIPTION
Modified  /trunk/madman/Rpacks/FlowSOM/DESCRIPTION
Modified  /trunk/madman/Rpacks/FourCSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/FunciSNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/GENE.E/DESCRIPTION
Modified  /trunk/madman/Rpacks/GENESIS/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOmetadb/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOquery/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOsearch/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOsubmission/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEWIST/DESCRIPTION
Modified  /trunk/madman/Rpacks/GGBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/GGtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/GLAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/GMRP/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOFunction/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOSemSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOTHiC/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOexpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOsummaries/DESCRIPTION
Modified  /trunk/madman/Rpacks/GRENITS/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSALightning/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSEABase/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSEAlm/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSRI/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSReg/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSVA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GUIDEseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/GWASTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenRank/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenVisR/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneAnswers/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneBreak/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneExpressionSignature/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneMeta/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneNetworkBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneOverlap/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneRegionScan/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneSelectMMD/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneSelector/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneticsDesign/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneticsPed/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenoGAM/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomeGraphs/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomeInfoDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicAlignments/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicInteractions/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicRanges/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicTuples/DESCRIPTION
Modified  /trunk/madman/Rpacks/Genominator/DESCRIPTION
Modified  /trunk/madman/Rpacks/Glimma/DESCRIPTION
Modified  /trunk/madman/Rpacks/GlobalAncova/DESCRIPTION
Modified  /trunk/madman/Rpacks/GoogleGenomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphAlignment/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/GreyListChIP/DESCRIPTION
Modified  /trunk/madman/Rpacks/Guitar/DESCRIPTION
Modified  /trunk/madman/Rpacks/Gviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/HCsnip/DESCRIPTION
Modified  /trunk/madman/Rpacks/HDF5Array/DESCRIPTION
Modified  /trunk/madman/Rpacks/HDTD/DESCRIPTION
Modified  /trunk/madman/Rpacks/HELP/DESCRIPTION
Modified  /trunk/madman/Rpacks/HEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/HIBAG/DESCRIPTION
Modified  /trunk/madman/Rpacks/HMMcopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSFilter/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSanalyzeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSeqGenie/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Harman/DESCRIPTION
Modified  /trunk/madman/Rpacks/Harshlight/DESCRIPTION
Modified  /trunk/madman/Rpacks/Heatplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/HiTC/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertCurve/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertVis/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertVisGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/HybridMTest/DESCRIPTION
Modified  /trunk/madman/Rpacks/IHW/DESCRIPTION
Modified  /trunk/madman/Rpacks/IMPCdata/DESCRIPTION
Modified  /trunk/madman/Rpacks/INPower/DESCRIPTION
Modified  /trunk/madman/Rpacks/INSPEcT/DESCRIPTION
Modified  /trunk/madman/Rpacks/IONiseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/IPPD/DESCRIPTION
Modified  /trunk/madman/Rpacks/IRanges/DESCRIPTION
Modified  /trunk/madman/Rpacks/ISoLDE/DESCRIPTION
Modified  /trunk/madman/Rpacks/ITALICS/DESCRIPTION
Modified  /trunk/madman/Rpacks/IVAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/Icens/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdMappingAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdMappingRetrieval/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdeoViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/Imetagene/DESCRIPTION
Modified  /trunk/madman/Rpacks/ImmuneSpaceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/InPAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/InteractionSet/DESCRIPTION
Modified  /trunk/madman/Rpacks/IsoGeneGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/JunctionSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/KCsmart/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGREST/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGprofile/DESCRIPTION
Modified  /trunk/madman/Rpacks/LBE/DESCRIPTION
Modified  /trunk/madman/Rpacks/LEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LMGene/DESCRIPTION
Modified  /trunk/madman/Rpacks/LOLA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LPE/DESCRIPTION
Modified  /trunk/madman/Rpacks/LPEadj/DESCRIPTION
Modified  /trunk/madman/Rpacks/LVSmiRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LedPred/DESCRIPTION
Modified  /trunk/madman/Rpacks/Linnorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/LiquidAssociation/DESCRIPTION
Modified  /trunk/madman/Rpacks/LowMACA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LymphoSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/M3D/DESCRIPTION
Modified  /trunk/madman/Rpacks/MAIT/DESCRIPTION
Modified  /trunk/madman/Rpacks/MANOR/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBASED/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBAmethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBCB/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBttest/DESCRIPTION
Modified  /trunk/madman/Rpacks/MCRestimate/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEAL/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEDIPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEDME/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEIGOR/DESCRIPTION
Modified  /trunk/madman/Rpacks/MGFM/DESCRIPTION
Modified  /trunk/madman/Rpacks/MIMOSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLInterfaces/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLP/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/MMDiff2/DESCRIPTION
Modified  /trunk/madman/Rpacks/MPFE/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSGFgui/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSGFplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnID/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/MVCClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/MantelCorr/DESCRIPTION
Modified  /trunk/madman/Rpacks/MassArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/MassSpecWavelet/DESCRIPTION
Modified  /trunk/madman/Rpacks/MatrixRider/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeSHDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeSHSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeasurementError.cor/DESCRIPTION
Modified  /trunk/madman/Rpacks/MergeMaid/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mergeomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/Metab/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethPed/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethTargetedNGS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylAid/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylMix/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylSeekR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mfuzz/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiChip/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiPP/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiRaGE/DESCRIPTION
Modified  /trunk/madman/Rpacks/MineICA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MinimumDistance/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mirsynergy/DESCRIPTION
Modified  /trunk/madman/Rpacks/MmPalateMiRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MoPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MotIV/DESCRIPTION
Modified  /trunk/madman/Rpacks/MotifDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mulcom/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiAssayExperiment/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiDataSet/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiMed/DESCRIPTION
Modified  /trunk/madman/Rpacks/NCIgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/NGScopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/NOISeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/NTW/DESCRIPTION
Modified  /trunk/madman/Rpacks/NanoStringDiff/DESCRIPTION
Modified  /trunk/madman/Rpacks/NanoStringQCPro/DESCRIPTION
Modified  /trunk/madman/Rpacks/NarrowPeaks/DESCRIPTION
Modified  /trunk/madman/Rpacks/NetPathMiner/DESCRIPTION
Modified  /trunk/madman/Rpacks/NetSAM/DESCRIPTION
Modified  /trunk/madman/Rpacks/NormqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/NuPoP/DESCRIPTION
Modified  /trunk/madman/Rpacks/OCplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/OGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/OLIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/OLINgui/DESCRIPTION
Modified  /trunk/madman/Rpacks/OSAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/OTUbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/OmicCircos/DESCRIPTION
Modified  /trunk/madman/Rpacks/OmicsMarkeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/OncoScore/DESCRIPTION
Modified  /trunk/madman/Rpacks/OncoSimulR/DESCRIPTION
Modified  /trunk/madman/Rpacks/OperaMate/DESCRIPTION
Modified  /trunk/madman/Rpacks/OrderedList/DESCRIPTION
Modified  /trunk/madman/Rpacks/OrganismDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/Oscope/DESCRIPTION
Modified  /trunk/madman/Rpacks/OutlierD/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PADOG/DESCRIPTION
Modified  /trunk/madman/Rpacks/PANR/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAPi/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAnnBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/PCAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/PCpheno/DESCRIPTION
Modified  /trunk/madman/Rpacks/PECA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PICS/DESCRIPTION
Modified  /trunk/madman/Rpacks/PING/DESCRIPTION
Modified  /trunk/madman/Rpacks/PLPE/DESCRIPTION
Modified  /trunk/madman/Rpacks/PREDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROMISE/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROPER/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROcess/DESCRIPTION
Modified  /trunk/madman/Rpacks/PSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PSICQUIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/PWMEnrich/DESCRIPTION
Modified  /trunk/madman/Rpacks/PanVizGenerator/DESCRIPTION
Modified  /trunk/madman/Rpacks/Path2PPI/DESCRIPTION
Modified  /trunk/madman/Rpacks/PathNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/Pbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/PhenStat/DESCRIPTION
Modified  /trunk/madman/Rpacks/Polyfit/DESCRIPTION
Modified  /trunk/madman/Rpacks/Prize/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProCoNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/Prostar/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProtGenerics/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProteomicsAnnotationHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/PureCN/DESCRIPTION
Modified  /trunk/madman/Rpacks/Pviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/QDNAseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/QUALIFIER/DESCRIPTION
Modified  /trunk/madman/Rpacks/QUBIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuartPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuasR/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuaternaryProd/DESCRIPTION
Modified  /trunk/madman/Rpacks/R3CPET/DESCRIPTION
Modified  /trunk/madman/Rpacks/R453Plus1Toolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/R4RNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBGL/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBM/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBioinf/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCASPAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCy3/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCyjs/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCytoscape/DESCRIPTION
Modified  /trunk/madman/Rpacks/RDAVIDWebService/DESCRIPTION
Modified  /trunk/madman/Rpacks/RDRToolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/REDseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGalaxy/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGraph2js/DESCRIPTION
Modified  /trunk/madman/Rpacks/RIPSeeker/DESCRIPTION
Modified  /trunk/madman/Rpacks/RImmPort/DESCRIPTION
Modified  /trunk/madman/Rpacks/RLMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/RMassBank/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNASeqPower/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAinteract/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAither/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAprobR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROC/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROntoTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/RPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RRHO/DESCRIPTION
Modified  /trunk/madman/Rpacks/RSVSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCGAToolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTN/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTopper/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVcorr/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVnormalize/DESCRIPTION
Modified  /trunk/madman/Rpacks/RamiGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/RankProd/DESCRIPTION
Modified  /trunk/madman/Rpacks/RareVariantVis/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rariant/DESCRIPTION
Modified  /trunk/madman/Rpacks/RbcBook1/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rbowtie/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rcade/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rchemcpp/DESCRIPTION
Modified  /trunk/madman/Rpacks/RchyOptimyx/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rcpi/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rdisop/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReQON/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReactomePA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReadqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RedeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RefNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/RefPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/Repitools/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReportingTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rgraphviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rhtslib/DESCRIPTION
Modified  /trunk/madman/Rpacks/RiboProfiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/Ringo/DESCRIPTION
Modified  /trunk/madman/Rpacks/Risa/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rmagpie/DESCRIPTION
Modified  /trunk/madman/Rpacks/RmiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RnBeads/DESCRIPTION
Modified  /trunk/madman/Rpacks/RnaSeqSampleSize/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rnits/DESCRIPTION
Modified  /trunk/madman/Rpacks/Roleswitch/DESCRIPTION
Modified  /trunk/madman/Rpacks/RpsiXML/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rsamtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rsubread/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rtreemix/DESCRIPTION
Modified  /trunk/madman/Rpacks/S4Vectors/DESCRIPTION
Modified  /trunk/madman/Rpacks/SAGx/DESCRIPTION
Modified  /trunk/madman/Rpacks/SANTA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SBMLR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SC3/DESCRIPTION
Modified  /trunk/madman/Rpacks/SCAN.UPC/DESCRIPTION
Modified  /trunk/madman/Rpacks/SELEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/SEPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SGSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/SICtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/SIM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SIMAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/SISPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SLGI/DESCRIPTION
Modified  /trunk/madman/Rpacks/SLqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SMAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/SMITE/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNAGEE/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPRelate/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPchip/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPhood/DESCRIPTION
Modified  /trunk/madman/Rpacks/SPEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SPIA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SQUADD/DESCRIPTION
Modified  /trunk/madman/Rpacks/SRAdb/DESCRIPTION
Modified  /trunk/madman/Rpacks/SSPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/STAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/STATegRa/DESCRIPTION
Modified  /trunk/madman/Rpacks/STRINGdb/DESCRIPTION
Modified  /trunk/madman/Rpacks/SVM2CRM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SWATH2stats/DESCRIPTION
Modified  /trunk/madman/Rpacks/SamSPECTRAL/DESCRIPTION
Modified  /trunk/madman/Rpacks/ScISI/DESCRIPTION
Modified  /trunk/madman/Rpacks/SemDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqVarTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/ShortRead/DESCRIPTION
Modified  /trunk/madman/Rpacks/SigCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/SigFuge/DESCRIPTION
Modified  /trunk/madman/Rpacks/SimBindProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/SomaticSignatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpacePAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpeCond/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpidermiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SplicingGraphs/DESCRIPTION
Modified  /trunk/madman/Rpacks/Starr/DESCRIPTION
Modified  /trunk/madman/Rpacks/Streamer/DESCRIPTION
Modified  /trunk/madman/Rpacks/SummarizedExperiment/DESCRIPTION
Modified  /trunk/madman/Rpacks/Sushi/DESCRIPTION
Modified  /trunk/madman/Rpacks/SwathXtend/DESCRIPTION
Modified  /trunk/madman/Rpacks/SwimR/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCGAbiolinks/DESCRIPTION
Modified  /trunk/madman/Rpacks/TDARACNE/DESCRIPTION
Modified  /trunk/madman/Rpacks/TEQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TFBSTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/TIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/TPP/DESCRIPTION
Modified  /trunk/madman/Rpacks/TRONCO/DESCRIPTION
Modified  /trunk/madman/Rpacks/TSCAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/TSSi/DESCRIPTION
Modified  /trunk/madman/Rpacks/TarSeqQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TargetScore/DESCRIPTION
Modified  /trunk/madman/Rpacks/TargetSearch/DESCRIPTION
Modified  /trunk/madman/Rpacks/TitanCNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ToPASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/TransView/DESCRIPTION
Modified  /trunk/madman/Rpacks/TurboNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/TypeInfo/DESCRIPTION
Modified  /trunk/madman/Rpacks/UNDO/DESCRIPTION
Modified  /trunk/madman/Rpacks/UniProt.ws/DESCRIPTION
Modified  /trunk/madman/Rpacks/Uniquorn/DESCRIPTION
Modified  /trunk/madman/Rpacks/VanillaICE/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantAnnotation/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantFiltering/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Vega/DESCRIPTION
Modified  /trunk/madman/Rpacks/VegaMC/DESCRIPTION
Modified  /trunk/madman/Rpacks/XBSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/XDE/DESCRIPTION
Modified  /trunk/madman/Rpacks/XVector/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Base/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Classif/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Core/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Preproc/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Reporting/DESCRIPTION
Modified  /trunk/madman/Rpacks/aCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/acde/DESCRIPTION
Modified  /trunk/madman/Rpacks/adSplit/DESCRIPTION
Modified  /trunk/madman/Rpacks/affxparser/DESCRIPTION
Modified  /trunk/madman/Rpacks/affy/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyContam/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyILM/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyPLM/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyPara/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyQCReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/affycomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/affycoretools/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyio/DESCRIPTION
Modified  /trunk/madman/Rpacks/affylmGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/affypdnn/DESCRIPTION
Modified  /trunk/madman/Rpacks/agilp/DESCRIPTION
Modified  /trunk/madman/Rpacks/alsace/DESCRIPTION
Modified  /trunk/madman/Rpacks/altcdfenvs/DESCRIPTION
Modified  /trunk/madman/Rpacks/ampliQueso/DESCRIPTION
Modified  /trunk/madman/Rpacks/annaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/annmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/annotate/DESCRIPTION
Modified  /trunk/madman/Rpacks/annotationTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/anota/DESCRIPTION
Modified  /trunk/madman/Rpacks/antiProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/apComplex/DESCRIPTION
Modified  /trunk/madman/Rpacks/aroma.light/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayMvout/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayQuality/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayQualityMetrics/DESCRIPTION
Modified  /trunk/madman/Rpacks/attract/DESCRIPTION
Modified  /trunk/madman/Rpacks/bacon/DESCRIPTION
Modified  /trunk/madman/Rpacks/ballgown/DESCRIPTION
Modified  /trunk/madman/Rpacks/bamsignals/DESCRIPTION
Modified  /trunk/madman/Rpacks/baySeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/beadarray/DESCRIPTION
Modified  /trunk/madman/Rpacks/beadarraySNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/betr/DESCRIPTION
Modified  /trunk/madman/Rpacks/bgafun/DESCRIPTION
Modified  /trunk/madman/Rpacks/bgx/DESCRIPTION
Modified  /trunk/madman/Rpacks/bigmemoryExtras/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioassayR/DESCRIPTION
Modified  /trunk/madman/Rpacks/biobroom/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocGraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocViews/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomaRt/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomformat/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomvRCNS/DESCRIPTION
Modified  /trunk/madman/Rpacks/biosigner/DESCRIPTION
Modified  /trunk/madman/Rpacks/biosvd/DESCRIPTION
Modified  /trunk/madman/Rpacks/biovizBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/birta/DESCRIPTION
Modified  /trunk/madman/Rpacks/birte/DESCRIPTION
Modified  /trunk/madman/Rpacks/blima/DESCRIPTION
Modified  /trunk/madman/Rpacks/bridge/DESCRIPTION
Modified  /trunk/madman/Rpacks/bsseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/bumphunter/DESCRIPTION
Modified  /trunk/madman/Rpacks/caOmicsV/DESCRIPTION
Modified  /trunk/madman/Rpacks/canceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/cancerclass/DESCRIPTION
Modified  /trunk/madman/Rpacks/casper/DESCRIPTION
Modified  /trunk/madman/Rpacks/categoryCompare/DESCRIPTION
Modified  /trunk/madman/Rpacks/ccrepe/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellGrowth/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellHTS2/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellTree/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellity/DESCRIPTION
Modified  /trunk/madman/Rpacks/cghMCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/charm/DESCRIPTION
Modified  /trunk/madman/Rpacks/chimera/DESCRIPTION
Modified  /trunk/madman/Rpacks/chipenrich/DESCRIPTION
Modified  /trunk/madman/Rpacks/chipseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/chopsticks/DESCRIPTION
Modified  /trunk/madman/Rpacks/chroGPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/chromDraw/DESCRIPTION
Modified  /trunk/madman/Rpacks/chromPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/cisPath/DESCRIPTION
Modified  /trunk/madman/Rpacks/cleanUpdTSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/cleaver/DESCRIPTION
Modified  /trunk/madman/Rpacks/clippda/DESCRIPTION
Modified  /trunk/madman/Rpacks/clipper/DESCRIPTION
Modified  /trunk/madman/Rpacks/clonotypeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/clst/DESCRIPTION
Modified  /trunk/madman/Rpacks/clstutils/DESCRIPTION
Modified  /trunk/madman/Rpacks/clustComp/DESCRIPTION
Modified  /trunk/madman/Rpacks/clusterProfiler/DESCRIPTION
Modified  /trunk/madman/Rpacks/clusterStab/DESCRIPTION
Modified  /trunk/madman/Rpacks/cn.farms/DESCRIPTION
Modified  /trunk/madman/Rpacks/cn.mops/DESCRIPTION
Modified  /trunk/madman/Rpacks/cnvGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/coGPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/coMET/DESCRIPTION
Modified  /trunk/madman/Rpacks/coRNAi/DESCRIPTION
Modified  /trunk/madman/Rpacks/cobindR/DESCRIPTION
Modified  /trunk/madman/Rpacks/codelink/DESCRIPTION
Modified  /trunk/madman/Rpacks/cogena/DESCRIPTION
Modified  /trunk/madman/Rpacks/compEpiTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/compcodeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/consensusSeekeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/contiBAIT/DESCRIPTION
Modified  /trunk/madman/Rpacks/conumee/DESCRIPTION
Modified  /trunk/madman/Rpacks/convert/DESCRIPTION
Modified  /trunk/madman/Rpacks/copa/DESCRIPTION
Modified  /trunk/madman/Rpacks/copynumber/DESCRIPTION
Modified  /trunk/madman/Rpacks/cosmiq/DESCRIPTION
Modified  /trunk/madman/Rpacks/cpvSNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/cqn/DESCRIPTION
Modified  /trunk/madman/Rpacks/crlmm/DESCRIPTION
Modified  /trunk/madman/Rpacks/csaw/DESCRIPTION
Modified  /trunk/madman/Rpacks/ctc/DESCRIPTION
Modified  /trunk/madman/Rpacks/cummeRbund/DESCRIPTION
Modified  /trunk/madman/Rpacks/customProDB/DESCRIPTION
Modified  /trunk/madman/Rpacks/cycle/DESCRIPTION
Modified  /trunk/madman/Rpacks/cytofkit/DESCRIPTION
Modified  /trunk/madman/Rpacks/daMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/dada2/DESCRIPTION
Modified  /trunk/madman/Rpacks/dagLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/dcGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ddCt/DESCRIPTION
Modified  /trunk/madman/Rpacks/ddgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/debrowser/DESCRIPTION
Modified  /trunk/madman/Rpacks/deepSNV/DESCRIPTION
Modified  /trunk/madman/Rpacks/deltaGseg/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinderHelper/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinderPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/destiny/DESCRIPTION
Modified  /trunk/madman/Rpacks/dexus/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffGeneAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffHic/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Modified  /trunk/madman/Rpacks/diggit/DESCRIPTION
Modified  /trunk/madman/Rpacks/dks/DESCRIPTION
Modified  /trunk/madman/Rpacks/domainsignatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/doppelgangR/DESCRIPTION
Modified  /trunk/madman/Rpacks/dualKS/DESCRIPTION
Modified  /trunk/madman/Rpacks/dupRadar/DESCRIPTION
Modified  /trunk/madman/Rpacks/dyebias/DESCRIPTION
Modified  /trunk/madman/Rpacks/easyRNASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ecolitk/DESCRIPTION
Modified  /trunk/madman/Rpacks/edge/DESCRIPTION
Modified  /trunk/madman/Rpacks/edgeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/eiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/eisa/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensemblVEP/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensembldb/DESCRIPTION
Modified  /trunk/madman/Rpacks/epigenomix/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizr/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrData/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrStandalone/DESCRIPTION
Modified  /trunk/madman/Rpacks/erccdashboard/DESCRIPTION
Modified  /trunk/madman/Rpacks/erma/DESCRIPTION
Modified  /trunk/madman/Rpacks/eudysbiome/DESCRIPTION
Modified  /trunk/madman/Rpacks/exomeCopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/exomePeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/explorase/DESCRIPTION
Modified  /trunk/madman/Rpacks/fCI/DESCRIPTION
Modified  /trunk/madman/Rpacks/fabia/DESCRIPTION
Modified  /trunk/madman/Rpacks/facopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/factDesign/DESCRIPTION
Modified  /trunk/madman/Rpacks/farms/DESCRIPTION
Modified  /trunk/madman/Rpacks/fastLiquidAssociation/DESCRIPTION
Modified  /trunk/madman/Rpacks/fastseg/DESCRIPTION
Modified  /trunk/madman/Rpacks/fdrame/DESCRIPTION
Modified  /trunk/madman/Rpacks/ffpe/DESCRIPTION
Modified  /trunk/madman/Rpacks/flagme/DESCRIPTION
Modified  /trunk/madman/Rpacks/flipflop/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowAI/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowBeads/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowBin/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCHIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCL/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowClean/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCyBar/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowDensity/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowFP/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowFit/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMatch/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMeans/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMerge/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowPeaks/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowPlots/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowQ/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowQB/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowTrans/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowType/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowUtils/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowVS/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowWorkspace/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowcatchR/DESCRIPTION
Modified  /trunk/madman/Rpacks/fmcsR/DESCRIPTION
Modified  /trunk/madman/Rpacks/focalCall/DESCRIPTION
Modified  /trunk/madman/Rpacks/frma/DESCRIPTION
Modified  /trunk/madman/Rpacks/frmaTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/gCMAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/gCMAPWeb/DESCRIPTION
Modified  /trunk/madman/Rpacks/gQTLBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/gQTLstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaga/DESCRIPTION
Modified  /trunk/madman/Rpacks/gage/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaggle/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaia/DESCRIPTION
Modified  /trunk/madman/Rpacks/garfield/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaucho/DESCRIPTION
Modified  /trunk/madman/Rpacks/gcatest/DESCRIPTION
Modified  /trunk/madman/Rpacks/gcrma/DESCRIPTION
Modified  /trunk/madman/Rpacks/gdsfmt/DESCRIPTION
Modified  /trunk/madman/Rpacks/geNetClassifier/DESCRIPTION
Modified  /trunk/madman/Rpacks/geecc/DESCRIPTION
Modified  /trunk/madman/Rpacks/genArise/DESCRIPTION
Modified  /trunk/madman/Rpacks/genbankr/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneRecommender/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneRxCluster/DESCRIPTION
Modified  /trunk/madman/Rpacks/genefilter/DESCRIPTION
Modified  /trunk/madman/Rpacks/genefu/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneplotter/DESCRIPTION
Modified  /trunk/madman/Rpacks/genoCN/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomation/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomeIntervals/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomes/DESCRIPTION
Modified  /trunk/madman/Rpacks/genoset/DESCRIPTION
Modified  /trunk/madman/Rpacks/genotypeeval/DESCRIPTION
Modified  /trunk/madman/Rpacks/genphen/DESCRIPTION
Modified  /trunk/madman/Rpacks/gespeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggbio/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggcyto/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggtree/DESCRIPTION
Modified  /trunk/madman/Rpacks/girafe/DESCRIPTION
Modified  /trunk/madman/Rpacks/globalSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/globaltest/DESCRIPTION
Modified  /trunk/madman/Rpacks/gmapR/DESCRIPTION
Modified  /trunk/madman/Rpacks/goProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/goTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/goseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/gpls/DESCRIPTION
Modified  /trunk/madman/Rpacks/gprege/DESCRIPTION
Modified  /trunk/madman/Rpacks/graph/DESCRIPTION
Modified  /trunk/madman/Rpacks/graphite/DESCRIPTION
Modified  /trunk/madman/Rpacks/groHMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/gtrellis/DESCRIPTION
Modified  /trunk/madman/Rpacks/gwascat/DESCRIPTION
Modified  /trunk/madman/Rpacks/h5vc/DESCRIPTION
Modified  /trunk/madman/Rpacks/hapFabia/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiAnnotator/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiReadsProcessor/DESCRIPTION
Modified  /trunk/madman/Rpacks/hierGWAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/hopach/DESCRIPTION
Modified  /trunk/madman/Rpacks/hpar/DESCRIPTION
Modified  /trunk/madman/Rpacks/htSeqTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/hyperdraw/DESCRIPTION
Modified  /trunk/madman/Rpacks/hypergraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/iASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/iBBiG/DESCRIPTION
Modified  /trunk/madman/Rpacks/iBMQ/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCARE/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCOBRA/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/iChip/DESCRIPTION
Modified  /trunk/madman/Rpacks/iClusterPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/iGC/DESCRIPTION
Modified  /trunk/madman/Rpacks/iPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/iSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ibh/DESCRIPTION
Modified  /trunk/madman/Rpacks/idiogram/DESCRIPTION
Modified  /trunk/madman/Rpacks/illuminaio/DESCRIPTION
Modified  /trunk/madman/Rpacks/imageHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/immunoClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/impute/DESCRIPTION
Modified  /trunk/madman/Rpacks/intansv/DESCRIPTION
Modified  /trunk/madman/Rpacks/interactiveDisplay/DESCRIPTION
Modified  /trunk/madman/Rpacks/interactiveDisplayBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/inveRsion/DESCRIPTION
Modified  /trunk/madman/Rpacks/iontree/DESCRIPTION
Modified  /trunk/madman/Rpacks/isobar/DESCRIPTION
Modified  /trunk/madman/Rpacks/isomiRs/DESCRIPTION
Modified  /trunk/madman/Rpacks/iterativeBMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/iterativeBMAsurv/DESCRIPTION
Modified  /trunk/madman/Rpacks/joda/DESCRIPTION
Modified  /trunk/madman/Rpacks/kebabs/DESCRIPTION
Modified  /trunk/madman/Rpacks/keggorthology/DESCRIPTION
Modified  /trunk/madman/Rpacks/kimod/DESCRIPTION
Modified  /trunk/madman/Rpacks/lapmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/ldblock/DESCRIPTION
Modified  /trunk/madman/Rpacks/les/DESCRIPTION
Modified  /trunk/madman/Rpacks/lfa/DESCRIPTION
Modified  /trunk/madman/Rpacks/limma/DESCRIPTION
Modified  /trunk/madman/Rpacks/limmaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/lmdme/DESCRIPTION
Modified  /trunk/madman/Rpacks/logicFS/DESCRIPTION
Modified  /trunk/madman/Rpacks/logitT/DESCRIPTION
Modified  /trunk/madman/Rpacks/lol/DESCRIPTION
Modified  /trunk/madman/Rpacks/lpNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/lpsymphony/DESCRIPTION
Modified  /trunk/madman/Rpacks/lumi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mAPKL/DESCRIPTION
Modified  /trunk/madman/Rpacks/mBPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/mQTL.NMR/DESCRIPTION
Modified  /trunk/madman/Rpacks/maCorrPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/maPredictDSC/DESCRIPTION
Modified  /trunk/madman/Rpacks/maSigPro/DESCRIPTION
Modified  /trunk/madman/Rpacks/maanova/DESCRIPTION
Modified  /trunk/madman/Rpacks/macat/DESCRIPTION
Modified  /trunk/madman/Rpacks/made4/DESCRIPTION
Modified  /trunk/madman/Rpacks/maigesPack/DESCRIPTION
Modified  /trunk/madman/Rpacks/makecdfenv/DESCRIPTION
Modified  /trunk/madman/Rpacks/manta/DESCRIPTION
Modified  /trunk/madman/Rpacks/marray/DESCRIPTION
Modified  /trunk/madman/Rpacks/maskBAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/massiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/matchBox/DESCRIPTION
Modified  /trunk/madman/Rpacks/mcaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/mdgsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/mdqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/meshr/DESCRIPTION
Modified  /trunk/madman/Rpacks/messina/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaCCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaMS/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/metabomxtr/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagene/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagenomeFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagenomeSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/metahdep/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/methVisual/DESCRIPTION
Modified  /trunk/madman/Rpacks/methyAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylMnM/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylPipe/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylumi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mgsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRLAB/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNAmeConverter/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNApath/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNAtap/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/microRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/minet/DESCRIPTION
Modified  /trunk/madman/Rpacks/minfi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mirIntegrator/DESCRIPTION
Modified  /trunk/madman/Rpacks/missMethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/mitoODE/DESCRIPTION
Modified  /trunk/madman/Rpacks/mmnet/DESCRIPTION
Modified  /trunk/madman/Rpacks/mogsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/monocle/DESCRIPTION
Modified  /trunk/madman/Rpacks/mosaics/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifRG/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifStack/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifbreakR/DESCRIPTION
Modified  /trunk/madman/Rpacks/msa/DESCRIPTION
Modified  /trunk/madman/Rpacks/msmsEDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/msmsTests/DESCRIPTION
Modified  /trunk/madman/Rpacks/multiClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/multiscan/DESCRIPTION
Modified  /trunk/madman/Rpacks/multtest/DESCRIPTION
Modified  /trunk/madman/Rpacks/muscle/DESCRIPTION
Modified  /trunk/madman/Rpacks/mvGST/DESCRIPTION
Modified  /trunk/madman/Rpacks/mygene/DESCRIPTION
Modified  /trunk/madman/Rpacks/myvariant/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzID/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ncdfFlow/DESCRIPTION
Modified  /trunk/madman/Rpacks/nem/DESCRIPTION
Modified  /trunk/madman/Rpacks/netbenchmark/DESCRIPTION
Modified  /trunk/madman/Rpacks/netbiov/DESCRIPTION
Modified  /trunk/madman/Rpacks/nethet/DESCRIPTION
Modified  /trunk/madman/Rpacks/netresponse/DESCRIPTION
Modified  /trunk/madman/Rpacks/networkBMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/nnNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/nondetects/DESCRIPTION
Modified  /trunk/madman/Rpacks/normalize450K/DESCRIPTION
Modified  /trunk/madman/Rpacks/npGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/nucleR/DESCRIPTION
Modified  /trunk/madman/Rpacks/nucleoSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/nudge/DESCRIPTION
Modified  /trunk/madman/Rpacks/occugene/DESCRIPTION
Modified  /trunk/madman/Rpacks/odseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/oligo/DESCRIPTION
Modified  /trunk/madman/Rpacks/oligoClasses/DESCRIPTION
Modified  /trunk/madman/Rpacks/omicade4/DESCRIPTION
Modified  /trunk/madman/Rpacks/oneChannelGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/ontoCAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/openCyto/DESCRIPTION
Modified  /trunk/madman/Rpacks/oposSOM/DESCRIPTION
Modified  /trunk/madman/Rpacks/oppar/DESCRIPTION
Modified  /trunk/madman/Rpacks/pRoloc/DESCRIPTION
Modified  /trunk/madman/Rpacks/pRolocGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/paircompviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/panp/DESCRIPTION
Modified  /trunk/madman/Rpacks/parglms/DESCRIPTION
Modified  /trunk/madman/Rpacks/parody/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathRender/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathVar/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathifier/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathview/DESCRIPTION
Modified  /trunk/madman/Rpacks/paxtoolsr/DESCRIPTION
Modified  /trunk/madman/Rpacks/pbcmc/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaExplorer/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaGoPromoter/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaMethods/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcot2/DESCRIPTION
Modified  /trunk/madman/Rpacks/pdInfoBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/pdmclass/DESCRIPTION
Modified  /trunk/madman/Rpacks/pepStat/DESCRIPTION
Modified  /trunk/madman/Rpacks/pepXMLTab/DESCRIPTION
Modified  /trunk/madman/Rpacks/phenoDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/phenoTest/DESCRIPTION
Modified  /trunk/madman/Rpacks/phyloseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/piano/DESCRIPTION
Modified  /trunk/madman/Rpacks/pickgene/DESCRIPTION
Modified  /trunk/madman/Rpacks/pint/DESCRIPTION
Modified  /trunk/madman/Rpacks/pkgDepTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/plateCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/plethy/DESCRIPTION
Modified  /trunk/madman/Rpacks/plgem/DESCRIPTION
Modified  /trunk/madman/Rpacks/plier/DESCRIPTION
Modified  /trunk/madman/Rpacks/plrs/DESCRIPTION
Modified  /trunk/madman/Rpacks/plw/DESCRIPTION
Modified  /trunk/madman/Rpacks/pmm/DESCRIPTION
Modified  /trunk/madman/Rpacks/podkat/DESCRIPTION
Modified  /trunk/madman/Rpacks/polyester/DESCRIPTION
Modified  /trunk/madman/Rpacks/ppiStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/pqsfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/prada/DESCRIPTION
Modified  /trunk/madman/Rpacks/prebs/DESCRIPTION
Modified  /trunk/madman/Rpacks/predictionet/DESCRIPTION
Modified  /trunk/madman/Rpacks/preprocessCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/proBAMr/DESCRIPTION
Modified  /trunk/madman/Rpacks/procoil/DESCRIPTION
Modified  /trunk/madman/Rpacks/profileScoreDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/prot2D/DESCRIPTION
Modified  /trunk/madman/Rpacks/proteinProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/proteoQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/psygenet2r/DESCRIPTION
Modified  /trunk/madman/Rpacks/puma/DESCRIPTION
Modified  /trunk/madman/Rpacks/pvac/DESCRIPTION
Modified  /trunk/madman/Rpacks/pvca/DESCRIPTION
Modified  /trunk/madman/Rpacks/pwOmics/DESCRIPTION
Modified  /trunk/madman/Rpacks/qcmetrics/DESCRIPTION
Modified  /trunk/madman/Rpacks/qpcrNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/qpgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/qrqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/quantro/DESCRIPTION
Modified  /trunk/madman/Rpacks/quantsmooth/DESCRIPTION
Modified  /trunk/madman/Rpacks/qusage/DESCRIPTION
Modified  /trunk/madman/Rpacks/qvalue/DESCRIPTION
Modified  /trunk/madman/Rpacks/r3Cseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/rBiopaxParser/DESCRIPTION
Modified  /trunk/madman/Rpacks/rCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/rGADEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rGREAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/rHVDM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rMAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/rRDP/DESCRIPTION
Modified  /trunk/madman/Rpacks/rSFFreader/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTANDEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTRM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTRMui/DESCRIPTION
Modified  /trunk/madman/Rpacks/rain/DESCRIPTION
Modified  /trunk/madman/Rpacks/rama/DESCRIPTION
Modified  /trunk/madman/Rpacks/randPack/DESCRIPTION
Modified  /trunk/madman/Rpacks/rbsurv/DESCRIPTION
Modified  /trunk/madman/Rpacks/rcellminer/DESCRIPTION
Modified  /trunk/madman/Rpacks/reb/DESCRIPTION
Modified  /trunk/madman/Rpacks/recoup/DESCRIPTION
Modified  /trunk/madman/Rpacks/regionReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/regioneR/DESCRIPTION
Modified  /trunk/madman/Rpacks/rfPred/DESCRIPTION
Modified  /trunk/madman/Rpacks/rgsepd/DESCRIPTION
Modified  /trunk/madman/Rpacks/rhdf5/DESCRIPTION
Modified  /trunk/madman/Rpacks/riboSeqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/rnaSeqMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/rnaseqcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/roar/DESCRIPTION
Modified  /trunk/madman/Rpacks/rols/DESCRIPTION
Modified  /trunk/madman/Rpacks/ropls/DESCRIPTION
Modified  /trunk/madman/Rpacks/rpx/DESCRIPTION
Modified  /trunk/madman/Rpacks/rqubic/DESCRIPTION
Modified  /trunk/madman/Rpacks/rsbml/DESCRIPTION
Modified  /trunk/madman/Rpacks/rtracklayer/DESCRIPTION
Modified  /trunk/madman/Rpacks/sRAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/sSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/safe/DESCRIPTION
Modified  /trunk/madman/Rpacks/sagenhaft/DESCRIPTION
Modified  /trunk/madman/Rpacks/sangerseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/sapFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/saps/DESCRIPTION
Modified  /trunk/madman/Rpacks/savR/DESCRIPTION
Modified  /trunk/madman/Rpacks/scater/DESCRIPTION
Modified  /trunk/madman/Rpacks/scde/DESCRIPTION
Modified  /trunk/madman/Rpacks/scran/DESCRIPTION
Modified  /trunk/madman/Rpacks/scsR/DESCRIPTION
Modified  /trunk/madman/Rpacks/segmentSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/seq2pathway/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqCNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqPattern/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqbias/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqplots/DESCRIPTION
Modified  /trunk/madman/Rpacks/sevenbridges/DESCRIPTION
Modified  /trunk/madman/Rpacks/shinyMethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/shinyTANDEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigPathway/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/siggenes/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigsquared/DESCRIPTION
Modified  /trunk/madman/Rpacks/similaRpeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/simpleaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/simulatorZ/DESCRIPTION
Modified  /trunk/madman/Rpacks/sincell/DESCRIPTION
Modified  /trunk/madman/Rpacks/sizepower/DESCRIPTION
Modified  /trunk/madman/Rpacks/skewr/DESCRIPTION
Modified  /trunk/madman/Rpacks/snapCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/snm/DESCRIPTION
Modified  /trunk/madman/Rpacks/snpStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/soGGi/DESCRIPTION
Modified  /trunk/madman/Rpacks/specL/DESCRIPTION
Modified  /trunk/madman/Rpacks/spikeLI/DESCRIPTION
Modified  /trunk/madman/Rpacks/spkTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/spliceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/spliceSites/DESCRIPTION
Modified  /trunk/madman/Rpacks/splicegear/DESCRIPTION
Modified  /trunk/madman/Rpacks/splineTimeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/splots/DESCRIPTION
Modified  /trunk/madman/Rpacks/spotSegmentation/DESCRIPTION
Modified  /trunk/madman/Rpacks/sscore/DESCRIPTION
Modified  /trunk/madman/Rpacks/sscu/DESCRIPTION
Modified  /trunk/madman/Rpacks/ssize/DESCRIPTION
Modified  /trunk/madman/Rpacks/ssviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/staRank/DESCRIPTION
Modified  /trunk/madman/Rpacks/stepNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/stepwiseCM/DESCRIPTION
Modified  /trunk/madman/Rpacks/subSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/supraHex/DESCRIPTION
Modified  /trunk/madman/Rpacks/survcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/sva/DESCRIPTION
Modified  /trunk/madman/Rpacks/switchBox/DESCRIPTION
Modified  /trunk/madman/Rpacks/synapter/DESCRIPTION
Modified  /trunk/madman/Rpacks/synlet/DESCRIPTION
Modified  /trunk/madman/Rpacks/systemPipeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/tRanslatome/DESCRIPTION
Modified  /trunk/madman/Rpacks/ternarynet/DESCRIPTION
Modified  /trunk/madman/Rpacks/tigre/DESCRIPTION
Modified  /trunk/madman/Rpacks/tilingArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/timecourse/DESCRIPTION
Modified  /trunk/madman/Rpacks/tkWidgets/DESCRIPTION
Modified  /trunk/madman/Rpacks/tofsims/DESCRIPTION
Modified  /trunk/madman/Rpacks/topGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/trackViewer/DESCRIPTION
Modified  /trunk/madman/Rpacks/tracktables/DESCRIPTION
Modified  /trunk/madman/Rpacks/transcriptR/DESCRIPTION
Modified  /trunk/madman/Rpacks/traseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/triform/DESCRIPTION
Modified  /trunk/madman/Rpacks/trigger/DESCRIPTION
Modified  /trunk/madman/Rpacks/trio/DESCRIPTION
Modified  /trunk/madman/Rpacks/triplex/DESCRIPTION
Modified  /trunk/madman/Rpacks/tspair/DESCRIPTION
Modified  /trunk/madman/Rpacks/tweeDEseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/twilight/DESCRIPTION
Modified  /trunk/madman/Rpacks/tximport/DESCRIPTION
Modified  /trunk/madman/Rpacks/unifiedWMWqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/variancePartition/DESCRIPTION
Modified  /trunk/madman/Rpacks/vbmp/DESCRIPTION
Modified  /trunk/madman/Rpacks/viper/DESCRIPTION
Modified  /trunk/madman/Rpacks/vsn/DESCRIPTION
Modified  /trunk/madman/Rpacks/vtpnet/DESCRIPTION
Modified  /trunk/madman/Rpacks/wateRmelon/DESCRIPTION
Modified  /trunk/madman/Rpacks/wavClusteR/DESCRIPTION
Modified  /trunk/madman/Rpacks/waveTiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/weaver/DESCRIPTION
Modified  /trunk/madman/Rpacks/webbioc/DESCRIPTION
Modified  /trunk/madman/Rpacks/widgetTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/xcms/DESCRIPTION
Modified  /trunk/madman/Rpacks/xmapbridge/DESCRIPTION
Modified  /trunk/madman/Rpacks/xps/DESCRIPTION
Modified  /trunk/madman/Rpacks/yaqcaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/zlibbioc/DESCRIPTION
bump version after creating 3.3 branch
Revision: 117079
Author: d.tenenbaum
Date: 2016-05-03T21:20:19+00:00
Paths:
Modified  /trunk/madman/Rpacks/ABAEnrichment/DESCRIPTION
Modified  /trunk/madman/Rpacks/ABSSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ABarray/DESCRIPTION
Modified  /trunk/madman/Rpacks/ACME/DESCRIPTION
Modified  /trunk/madman/Rpacks/ADaCGH2/DESCRIPTION
Modified  /trunk/madman/Rpacks/AGDEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/AIMS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ALDEx2/DESCRIPTION
Modified  /trunk/madman/Rpacks/ARRmNormalization/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASEB/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASGSCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASSET/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASSIGN/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyCompatible/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyExpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyRNADegradation/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyTiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/AgiMicroRna/DESCRIPTION
Modified  /trunk/madman/Rpacks/AllelicImbalance/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnalysisPageServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/AneuFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationForge/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationFuncs/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationHub/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayExpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayExpressHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayTV/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/AtlasRDF/DESCRIPTION
Modified  /trunk/madman/Rpacks/BAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BADER/DESCRIPTION
Modified  /trunk/madman/Rpacks/BAGS/DESCRIPTION
Modified  /trunk/madman/Rpacks/BBCAnalyzer/DESCRIPTION
Modified  /trunk/madman/Rpacks/BCRANK/DESCRIPTION
Modified  /trunk/madman/Rpacks/BEAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/BEclear/DESCRIPTION
Modified  /trunk/madman/Rpacks/BGmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/BHC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BRAIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/BSgenome/DESCRIPTION
Modified  /trunk/madman/Rpacks/BUS/DESCRIPTION
Modified  /trunk/madman/Rpacks/BadRegionFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/BaseSpaceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Basic4Cseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BasicSTARRseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BatchQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BayesPeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/BeadDataPackR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BgeeDB/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiGGR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiRewire/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BicARE/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioMVCClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioSeqClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/Biobase/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocCaseStudies/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocGenerics/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocInstaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocParallel/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocStyle/DESCRIPTION
Modified  /trunk/madman/Rpacks/Biostrings/DESCRIPTION
Modified  /trunk/madman/Rpacks/BitSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrainStars/DESCRIPTION
Modified  /trunk/madman/Rpacks/BridgeDbR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrowserViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrowserVizDemo/DESCRIPTION
Modified  /trunk/madman/Rpacks/BubbleTree/DESCRIPTION
Modified  /trunk/madman/Rpacks/BufferedMatrix/DESCRIPTION
Modified  /trunk/madman/Rpacks/BufferedMatrixMethods/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAFE/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAGEr/DESCRIPTION
Modified  /trunk/madman/Rpacks/CALIB/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAMERA/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAnD/DESCRIPTION
Modified  /trunk/madman/Rpacks/CFAssay/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGEN/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHcall/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHnormaliter/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHregions/DESCRIPTION
Modified  /trunk/madman/Rpacks/CHRONOS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CINdex/DESCRIPTION
Modified  /trunk/madman/Rpacks/CMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNAnorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNEr/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORdt/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORfeeder/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORfuzzy/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORode/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNPBayes/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVPanelizer/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVrd2/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/CODEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/COHCAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/COMPASS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CONFESS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CORREP/DESCRIPTION
Modified  /trunk/madman/Rpacks/COSNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/CRISPRseek/DESCRIPTION
Modified  /trunk/madman/Rpacks/CRImage/DESCRIPTION
Modified  /trunk/madman/Rpacks/CSAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CSSP/DESCRIPTION
Modified  /trunk/madman/Rpacks/CancerMutationAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/Cardinal/DESCRIPTION
Modified  /trunk/madman/Rpacks/Category/DESCRIPTION
Modified  /trunk/madman/Rpacks/CausalR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CellNOptR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CexoR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChAMP/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPComp/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPXpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPpeakAnno/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPseeker/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPsim/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChemmineOB/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChemmineR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Chicago/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChromHeatMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/ClassifyR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clonality/DESCRIPTION
Modified  /trunk/madman/Rpacks/ClusterSignificance/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoCiteStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoGAPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoRegNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/CompGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/ComplexHeatmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/ConsensusClusterPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/CopyNumber450k/DESCRIPTION
Modified  /trunk/madman/Rpacks/CopywriteR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CorMut/DESCRIPTION
Modified  /trunk/madman/Rpacks/Cormotif/DESCRIPTION
Modified  /trunk/madman/Rpacks/CountClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoverageView/DESCRIPTION
Modified  /trunk/madman/Rpacks/CrispRVariants/DESCRIPTION
Modified  /trunk/madman/Rpacks/DAPAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DART/DESCRIPTION
Modified  /trunk/madman/Rpacks/DASiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DAVIDQuery/DESCRIPTION
Modified  /trunk/madman/Rpacks/DBChIP/DESCRIPTION
Modified  /trunk/madman/Rpacks/DChIPRep/DESCRIPTION
Modified  /trunk/madman/Rpacks/DECIPHER/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEDS/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEFormats/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGreport/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DESeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DESeq2/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEXSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DFP/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRcaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRcate/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRforPairs/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNABarcodes/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNAcopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNAshapeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DOQTL/DESCRIPTION
Modified  /trunk/madman/Rpacks/DOSE/DESCRIPTION
Modified  /trunk/madman/Rpacks/DRIMSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DSS/DESCRIPTION
Modified  /trunk/madman/Rpacks/DTA/DESCRIPTION
Modified  /trunk/madman/Rpacks/DeMAND/DESCRIPTION
Modified  /trunk/madman/Rpacks/DeconRNASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DiffBind/DESCRIPTION
Modified  /trunk/madman/Rpacks/DiffLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/DirichletMultinomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/DriverNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/DrugVsDisease/DESCRIPTION
Modified  /trunk/madman/Rpacks/DupChecker/DESCRIPTION
Modified  /trunk/madman/Rpacks/DynDoc/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBImage/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSeqHMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBarrays/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBcoexpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/EDASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/EDDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/EGAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/EGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ELBOW/DESCRIPTION
Modified  /trunk/madman/Rpacks/ELMER/DESCRIPTION
Modified  /trunk/madman/Rpacks/EMDomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENCODExplorer/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENVISIONQuery/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/EWCE/DESCRIPTION
Modified  /trunk/madman/Rpacks/EasyqpcR/DESCRIPTION
Modified  /trunk/madman/Rpacks/EmpiricalBrownsMethod/DESCRIPTION
Modified  /trunk/madman/Rpacks/EnrichedHeatmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/EnrichmentBrowser/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExiMiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExpressionAtlas/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExpressionView/DESCRIPTION
Modified  /trunk/madman/Rpacks/FEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/FGNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/FISHalyseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/FRGEpistasis/DESCRIPTION
Modified  /trunk/madman/Rpacks/FamAgg/DESCRIPTION
Modified  /trunk/madman/Rpacks/FindMyFriends/DESCRIPTION
Modified  /trunk/madman/Rpacks/FlowRepositoryR/DESCRIPTION
Modified  /trunk/madman/Rpacks/FlowSOM/DESCRIPTION
Modified  /trunk/madman/Rpacks/FourCSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/FunciSNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/GENE.E/DESCRIPTION
Modified  /trunk/madman/Rpacks/GENESIS/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOmetadb/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOquery/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOsearch/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOsubmission/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEWIST/DESCRIPTION
Modified  /trunk/madman/Rpacks/GGBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/GGtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/GLAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/GMRP/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOFunction/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOSemSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOTHiC/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOexpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOsummaries/DESCRIPTION
Modified  /trunk/madman/Rpacks/GRENITS/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSALightning/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSEABase/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSEAlm/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSRI/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSReg/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSVA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GUIDEseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/GWASTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenRank/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenVisR/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneAnswers/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneBreak/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneExpressionSignature/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneMeta/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneNetworkBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneOverlap/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneRegionScan/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneSelectMMD/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneSelector/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneticsDesign/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneticsPed/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenoGAM/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenoView/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomeGraphs/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomeInfoDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicAlignments/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicInteractions/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicRanges/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicTuples/DESCRIPTION
Modified  /trunk/madman/Rpacks/Genominator/DESCRIPTION
Modified  /trunk/madman/Rpacks/Glimma/DESCRIPTION
Modified  /trunk/madman/Rpacks/GlobalAncova/DESCRIPTION
Modified  /trunk/madman/Rpacks/GoogleGenomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphAlignment/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/GreyListChIP/DESCRIPTION
Modified  /trunk/madman/Rpacks/Guitar/DESCRIPTION
Modified  /trunk/madman/Rpacks/Gviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/HCsnip/DESCRIPTION
Modified  /trunk/madman/Rpacks/HDF5Array/DESCRIPTION
Modified  /trunk/madman/Rpacks/HDTD/DESCRIPTION
Modified  /trunk/madman/Rpacks/HELP/DESCRIPTION
Modified  /trunk/madman/Rpacks/HEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/HIBAG/DESCRIPTION
Modified  /trunk/madman/Rpacks/HMMcopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSFilter/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSanalyzeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSeqGenie/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Harman/DESCRIPTION
Modified  /trunk/madman/Rpacks/Harshlight/DESCRIPTION
Modified  /trunk/madman/Rpacks/Heatplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/HiTC/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertCurve/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertVis/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertVisGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/HybridMTest/DESCRIPTION
Modified  /trunk/madman/Rpacks/IHW/DESCRIPTION
Modified  /trunk/madman/Rpacks/IMPCdata/DESCRIPTION
Modified  /trunk/madman/Rpacks/INPower/DESCRIPTION
Modified  /trunk/madman/Rpacks/INSPEcT/DESCRIPTION
Modified  /trunk/madman/Rpacks/IONiseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/IPPD/DESCRIPTION
Modified  /trunk/madman/Rpacks/IRanges/DESCRIPTION
Modified  /trunk/madman/Rpacks/ISoLDE/DESCRIPTION
Modified  /trunk/madman/Rpacks/ITALICS/DESCRIPTION
Modified  /trunk/madman/Rpacks/IVAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/Icens/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdMappingAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdMappingRetrieval/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdeoViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/Imetagene/DESCRIPTION
Modified  /trunk/madman/Rpacks/ImmuneSpaceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/InPAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/InteractionSet/DESCRIPTION
Modified  /trunk/madman/Rpacks/IsoGeneGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/JunctionSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/KCsmart/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGREST/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGprofile/DESCRIPTION
Modified  /trunk/madman/Rpacks/LBE/DESCRIPTION
Modified  /trunk/madman/Rpacks/LEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LMGene/DESCRIPTION
Modified  /trunk/madman/Rpacks/LOLA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LPE/DESCRIPTION
Modified  /trunk/madman/Rpacks/LPEadj/DESCRIPTION
Modified  /trunk/madman/Rpacks/LVSmiRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LedPred/DESCRIPTION
Modified  /trunk/madman/Rpacks/Linnorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/LiquidAssociation/DESCRIPTION
Modified  /trunk/madman/Rpacks/LowMACA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LymphoSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/M3D/DESCRIPTION
Modified  /trunk/madman/Rpacks/MAIT/DESCRIPTION
Modified  /trunk/madman/Rpacks/MANOR/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBASED/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBAmethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBCB/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBttest/DESCRIPTION
Modified  /trunk/madman/Rpacks/MCRestimate/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEAL/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEDIPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEDME/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEIGOR/DESCRIPTION
Modified  /trunk/madman/Rpacks/MGFM/DESCRIPTION
Modified  /trunk/madman/Rpacks/MIMOSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLInterfaces/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLP/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/MMDiff/DESCRIPTION
Modified  /trunk/madman/Rpacks/MMDiff2/DESCRIPTION
Modified  /trunk/madman/Rpacks/MPFE/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSGFgui/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSGFplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnID/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/MVCClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/MantelCorr/DESCRIPTION
Modified  /trunk/madman/Rpacks/MassArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/MassSpecWavelet/DESCRIPTION
Modified  /trunk/madman/Rpacks/MatrixRider/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeSHDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeSHSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeasurementError.cor/DESCRIPTION
Modified  /trunk/madman/Rpacks/MergeMaid/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mergeomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/Metab/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethPed/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethTargetedNGS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylAid/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylMix/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylSeekR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mfuzz/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiChip/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiPP/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiRaGE/DESCRIPTION
Modified  /trunk/madman/Rpacks/MineICA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MinimumDistance/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mirsynergy/DESCRIPTION
Modified  /trunk/madman/Rpacks/MmPalateMiRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MoPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MotIV/DESCRIPTION
Modified  /trunk/madman/Rpacks/MotifDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mulcom/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiDataSet/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiMed/DESCRIPTION
Modified  /trunk/madman/Rpacks/NCIgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/NGScopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/NOISeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/NTW/DESCRIPTION
Modified  /trunk/madman/Rpacks/NanoStringDiff/DESCRIPTION
Modified  /trunk/madman/Rpacks/NanoStringQCPro/DESCRIPTION
Modified  /trunk/madman/Rpacks/NarrowPeaks/DESCRIPTION
Modified  /trunk/madman/Rpacks/NetPathMiner/DESCRIPTION
Modified  /trunk/madman/Rpacks/NetSAM/DESCRIPTION
Modified  /trunk/madman/Rpacks/NormqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/NuPoP/DESCRIPTION
Modified  /trunk/madman/Rpacks/OCplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/OGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/OLIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/OLINgui/DESCRIPTION
Modified  /trunk/madman/Rpacks/OSAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/OTUbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/OmicCircos/DESCRIPTION
Modified  /trunk/madman/Rpacks/OmicsMarkeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/OncoScore/DESCRIPTION
Modified  /trunk/madman/Rpacks/OncoSimulR/DESCRIPTION
Modified  /trunk/madman/Rpacks/OperaMate/DESCRIPTION
Modified  /trunk/madman/Rpacks/OrderedList/DESCRIPTION
Modified  /trunk/madman/Rpacks/OrganismDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/Oscope/DESCRIPTION
Modified  /trunk/madman/Rpacks/OutlierD/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PADOG/DESCRIPTION
Modified  /trunk/madman/Rpacks/PANR/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAPi/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAnnBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/PCAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/PCpheno/DESCRIPTION
Modified  /trunk/madman/Rpacks/PECA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PICS/DESCRIPTION
Modified  /trunk/madman/Rpacks/PING/DESCRIPTION
Modified  /trunk/madman/Rpacks/PLPE/DESCRIPTION
Modified  /trunk/madman/Rpacks/PREDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROMISE/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROPER/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROcess/DESCRIPTION
Modified  /trunk/madman/Rpacks/PSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PSICQUIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/PWMEnrich/DESCRIPTION
Modified  /trunk/madman/Rpacks/PanVizGenerator/DESCRIPTION
Modified  /trunk/madman/Rpacks/Path2PPI/DESCRIPTION
Modified  /trunk/madman/Rpacks/PathNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/Pbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/PhenStat/DESCRIPTION
Modified  /trunk/madman/Rpacks/Polyfit/DESCRIPTION
Modified  /trunk/madman/Rpacks/Prize/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProCoNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/Prostar/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProtGenerics/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProteomicsAnnotationHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/PureCN/DESCRIPTION
Modified  /trunk/madman/Rpacks/Pviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/QDNAseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/QUALIFIER/DESCRIPTION
Modified  /trunk/madman/Rpacks/QUBIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuartPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuasR/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuaternaryProd/DESCRIPTION
Modified  /trunk/madman/Rpacks/R3CPET/DESCRIPTION
Modified  /trunk/madman/Rpacks/R453Plus1Toolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/R4RNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBGL/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBM/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBioinf/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCASPAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCy3/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCyjs/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCytoscape/DESCRIPTION
Modified  /trunk/madman/Rpacks/RDAVIDWebService/DESCRIPTION
Modified  /trunk/madman/Rpacks/RDRToolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/REDseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGalaxy/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGraph2js/DESCRIPTION
Modified  /trunk/madman/Rpacks/RIPSeeker/DESCRIPTION
Modified  /trunk/madman/Rpacks/RImmPort/DESCRIPTION
Modified  /trunk/madman/Rpacks/RLMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/RMassBank/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNASeqPower/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAinteract/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAither/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAprobR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROC/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROntoTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/RPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RRHO/DESCRIPTION
Modified  /trunk/madman/Rpacks/RSVSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCGAToolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTN/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTopper/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVcorr/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVnormalize/DESCRIPTION
Modified  /trunk/madman/Rpacks/RWebServices/DESCRIPTION
Modified  /trunk/madman/Rpacks/RamiGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/RankProd/DESCRIPTION
Modified  /trunk/madman/Rpacks/RareVariantVis/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rariant/DESCRIPTION
Modified  /trunk/madman/Rpacks/RbcBook1/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rbowtie/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rcade/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rchemcpp/DESCRIPTION
Modified  /trunk/madman/Rpacks/RchyOptimyx/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rcpi/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rdisop/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReQON/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReactomePA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReadqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RedeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RefNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/RefPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/Repitools/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReportingTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rgraphviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rhtslib/DESCRIPTION
Modified  /trunk/madman/Rpacks/RiboProfiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/Ringo/DESCRIPTION
Modified  /trunk/madman/Rpacks/Risa/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rmagpie/DESCRIPTION
Modified  /trunk/madman/Rpacks/RmiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RnBeads/DESCRIPTION
Modified  /trunk/madman/Rpacks/RnaSeqSampleSize/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rnits/DESCRIPTION
Modified  /trunk/madman/Rpacks/Roleswitch/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rolexa/DESCRIPTION
Modified  /trunk/madman/Rpacks/RpsiXML/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rsamtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rsubread/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rtreemix/DESCRIPTION
Modified  /trunk/madman/Rpacks/S4Vectors/DESCRIPTION
Modified  /trunk/madman/Rpacks/SAGx/DESCRIPTION
Modified  /trunk/madman/Rpacks/SANTA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SBMLR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SC3/DESCRIPTION
Modified  /trunk/madman/Rpacks/SCAN.UPC/DESCRIPTION
Modified  /trunk/madman/Rpacks/SELEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/SEPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SGSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/SICtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/SIM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SIMAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/SISPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SJava/DESCRIPTION
Modified  /trunk/madman/Rpacks/SLGI/DESCRIPTION
Modified  /trunk/madman/Rpacks/SLqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SMAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/SMITE/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNAGEE/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPRelate/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPchip/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPhood/DESCRIPTION
Modified  /trunk/madman/Rpacks/SPEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SPIA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SQUADD/DESCRIPTION
Modified  /trunk/madman/Rpacks/SRAdb/DESCRIPTION
Modified  /trunk/madman/Rpacks/SSPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/STAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/STATegRa/DESCRIPTION
Modified  /trunk/madman/Rpacks/STRINGdb/DESCRIPTION
Modified  /trunk/madman/Rpacks/SVM2CRM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SWATH2stats/DESCRIPTION
Modified  /trunk/madman/Rpacks/SamSPECTRAL/DESCRIPTION
Modified  /trunk/madman/Rpacks/ScISI/DESCRIPTION
Modified  /trunk/madman/Rpacks/SemDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqVarTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/ShortRead/DESCRIPTION
Modified  /trunk/madman/Rpacks/SigCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/SigFuge/DESCRIPTION
Modified  /trunk/madman/Rpacks/SimBindProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/SomatiCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SomaticSignatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpacePAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpeCond/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpidermiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SplicingGraphs/DESCRIPTION
Modified  /trunk/madman/Rpacks/Starr/DESCRIPTION
Modified  /trunk/madman/Rpacks/Streamer/DESCRIPTION
Modified  /trunk/madman/Rpacks/SummarizedExperiment/DESCRIPTION
Modified  /trunk/madman/Rpacks/Sushi/DESCRIPTION
Modified  /trunk/madman/Rpacks/SwathXtend/DESCRIPTION
Modified  /trunk/madman/Rpacks/SwimR/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCGAbiolinks/DESCRIPTION
Modified  /trunk/madman/Rpacks/TDARACNE/DESCRIPTION
Modified  /trunk/madman/Rpacks/TEQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TFBSTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/TIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/TPP/DESCRIPTION
Modified  /trunk/madman/Rpacks/TRONCO/DESCRIPTION
Modified  /trunk/madman/Rpacks/TSCAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/TSSi/DESCRIPTION
Modified  /trunk/madman/Rpacks/TarSeqQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TargetScore/DESCRIPTION
Modified  /trunk/madman/Rpacks/TargetSearch/DESCRIPTION
Modified  /trunk/madman/Rpacks/TitanCNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ToPASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/TransView/DESCRIPTION
Modified  /trunk/madman/Rpacks/TurboNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/TypeInfo/DESCRIPTION
Modified  /trunk/madman/Rpacks/UNDO/DESCRIPTION
Modified  /trunk/madman/Rpacks/UniProt.ws/DESCRIPTION
Modified  /trunk/madman/Rpacks/Uniquorn/DESCRIPTION
Modified  /trunk/madman/Rpacks/VanillaICE/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantAnnotation/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantFiltering/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Vega/DESCRIPTION
Modified  /trunk/madman/Rpacks/VegaMC/DESCRIPTION
Modified  /trunk/madman/Rpacks/XBSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/XDE/DESCRIPTION
Modified  /trunk/madman/Rpacks/XVector/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Base/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Classif/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Core/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Preproc/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Reporting/DESCRIPTION
Modified  /trunk/madman/Rpacks/aCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/acde/DESCRIPTION
Modified  /trunk/madman/Rpacks/adSplit/DESCRIPTION
Modified  /trunk/madman/Rpacks/affxparser/DESCRIPTION
Modified  /trunk/madman/Rpacks/affy/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyContam/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyILM/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyPLM/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyPara/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyQCReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/affycomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/affycoretools/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyio/DESCRIPTION
Modified  /trunk/madman/Rpacks/affylmGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/affypdnn/DESCRIPTION
Modified  /trunk/madman/Rpacks/agilp/DESCRIPTION
Modified  /trunk/madman/Rpacks/alsace/DESCRIPTION
Modified  /trunk/madman/Rpacks/altcdfenvs/DESCRIPTION
Modified  /trunk/madman/Rpacks/ampliQueso/DESCRIPTION
Modified  /trunk/madman/Rpacks/annaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/annmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/annotate/DESCRIPTION
Modified  /trunk/madman/Rpacks/annotationTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/anota/DESCRIPTION
Modified  /trunk/madman/Rpacks/antiProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/apComplex/DESCRIPTION
Modified  /trunk/madman/Rpacks/aroma.light/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayMvout/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayQuality/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayQualityMetrics/DESCRIPTION
Modified  /trunk/madman/Rpacks/attract/DESCRIPTION
Modified  /trunk/madman/Rpacks/bacon/DESCRIPTION
Modified  /trunk/madman/Rpacks/ballgown/DESCRIPTION
Modified  /trunk/madman/Rpacks/bamsignals/DESCRIPTION
Modified  /trunk/madman/Rpacks/baySeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/beadarray/DESCRIPTION
Modified  /trunk/madman/Rpacks/beadarraySNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/betr/DESCRIPTION
Modified  /trunk/madman/Rpacks/bgafun/DESCRIPTION
Modified  /trunk/madman/Rpacks/bgx/DESCRIPTION
Modified  /trunk/madman/Rpacks/bigmemoryExtras/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioassayR/DESCRIPTION
Modified  /trunk/madman/Rpacks/biobroom/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocGraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocViews/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomaRt/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomformat/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomvRCNS/DESCRIPTION
Modified  /trunk/madman/Rpacks/biosigner/DESCRIPTION
Modified  /trunk/madman/Rpacks/biosvd/DESCRIPTION
Modified  /trunk/madman/Rpacks/biovizBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/birta/DESCRIPTION
Modified  /trunk/madman/Rpacks/birte/DESCRIPTION
Modified  /trunk/madman/Rpacks/blima/DESCRIPTION
Modified  /trunk/madman/Rpacks/bridge/DESCRIPTION
Modified  /trunk/madman/Rpacks/bsseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/bumphunter/DESCRIPTION
Modified  /trunk/madman/Rpacks/caOmicsV/DESCRIPTION
Modified  /trunk/madman/Rpacks/canceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/cancerclass/DESCRIPTION
Modified  /trunk/madman/Rpacks/casper/DESCRIPTION
Modified  /trunk/madman/Rpacks/categoryCompare/DESCRIPTION
Modified  /trunk/madman/Rpacks/ccrepe/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellGrowth/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellHTS2/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellTree/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellity/DESCRIPTION
Modified  /trunk/madman/Rpacks/cghMCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/charm/DESCRIPTION
Modified  /trunk/madman/Rpacks/chimera/DESCRIPTION
Modified  /trunk/madman/Rpacks/chipenrich/DESCRIPTION
Modified  /trunk/madman/Rpacks/chipseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/chopsticks/DESCRIPTION
Modified  /trunk/madman/Rpacks/chroGPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/chromDraw/DESCRIPTION
Modified  /trunk/madman/Rpacks/chromPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/cisPath/DESCRIPTION
Modified  /trunk/madman/Rpacks/cleanUpdTSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/cleaver/DESCRIPTION
Modified  /trunk/madman/Rpacks/clippda/DESCRIPTION
Modified  /trunk/madman/Rpacks/clipper/DESCRIPTION
Modified  /trunk/madman/Rpacks/clonotypeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/clst/DESCRIPTION
Modified  /trunk/madman/Rpacks/clstutils/DESCRIPTION
Modified  /trunk/madman/Rpacks/clustComp/DESCRIPTION
Modified  /trunk/madman/Rpacks/clusterProfiler/DESCRIPTION
Modified  /trunk/madman/Rpacks/clusterStab/DESCRIPTION
Modified  /trunk/madman/Rpacks/cn.farms/DESCRIPTION
Modified  /trunk/madman/Rpacks/cn.mops/DESCRIPTION
Modified  /trunk/madman/Rpacks/cnvGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/coGPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/coMET/DESCRIPTION
Modified  /trunk/madman/Rpacks/coRNAi/DESCRIPTION
Modified  /trunk/madman/Rpacks/cobindR/DESCRIPTION
Modified  /trunk/madman/Rpacks/codelink/DESCRIPTION
Modified  /trunk/madman/Rpacks/cogena/DESCRIPTION
Modified  /trunk/madman/Rpacks/compEpiTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/compcodeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/consensusSeekeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/contiBAIT/DESCRIPTION
Modified  /trunk/madman/Rpacks/conumee/DESCRIPTION
Modified  /trunk/madman/Rpacks/convert/DESCRIPTION
Modified  /trunk/madman/Rpacks/copa/DESCRIPTION
Modified  /trunk/madman/Rpacks/copynumber/DESCRIPTION
Modified  /trunk/madman/Rpacks/cosmiq/DESCRIPTION
Modified  /trunk/madman/Rpacks/cpvSNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/cqn/DESCRIPTION
Modified  /trunk/madman/Rpacks/crlmm/DESCRIPTION
Modified  /trunk/madman/Rpacks/csaw/DESCRIPTION
Modified  /trunk/madman/Rpacks/ctc/DESCRIPTION
Modified  /trunk/madman/Rpacks/cummeRbund/DESCRIPTION
Modified  /trunk/madman/Rpacks/customProDB/DESCRIPTION
Modified  /trunk/madman/Rpacks/cycle/DESCRIPTION
Modified  /trunk/madman/Rpacks/cytofkit/DESCRIPTION
Modified  /trunk/madman/Rpacks/daMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/dada2/DESCRIPTION
Modified  /trunk/madman/Rpacks/dagLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/dcGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ddCt/DESCRIPTION
Modified  /trunk/madman/Rpacks/ddgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/debrowser/DESCRIPTION
Modified  /trunk/madman/Rpacks/deepSNV/DESCRIPTION
Modified  /trunk/madman/Rpacks/deltaGseg/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinderHelper/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinderPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/destiny/DESCRIPTION
Modified  /trunk/madman/Rpacks/dexus/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffGeneAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffHic/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Modified  /trunk/madman/Rpacks/diggit/DESCRIPTION
Modified  /trunk/madman/Rpacks/dks/DESCRIPTION
Modified  /trunk/madman/Rpacks/domainsignatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/doppelgangR/DESCRIPTION
Modified  /trunk/madman/Rpacks/dualKS/DESCRIPTION
Modified  /trunk/madman/Rpacks/dupRadar/DESCRIPTION
Modified  /trunk/madman/Rpacks/dyebias/DESCRIPTION
Modified  /trunk/madman/Rpacks/easyRNASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ecolitk/DESCRIPTION
Modified  /trunk/madman/Rpacks/edge/DESCRIPTION
Modified  /trunk/madman/Rpacks/edgeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/eiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/eisa/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensemblVEP/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensembldb/DESCRIPTION
Modified  /trunk/madman/Rpacks/epigenomix/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizr/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrData/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrStandalone/DESCRIPTION
Modified  /trunk/madman/Rpacks/erccdashboard/DESCRIPTION
Modified  /trunk/madman/Rpacks/erma/DESCRIPTION
Modified  /trunk/madman/Rpacks/eudysbiome/DESCRIPTION
Modified  /trunk/madman/Rpacks/exomeCopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/exomePeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/explorase/DESCRIPTION
Modified  /trunk/madman/Rpacks/fCI/DESCRIPTION
Modified  /trunk/madman/Rpacks/fabia/DESCRIPTION
Modified  /trunk/madman/Rpacks/facopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/factDesign/DESCRIPTION
Modified  /trunk/madman/Rpacks/farms/DESCRIPTION
Modified  /trunk/madman/Rpacks/fastLiquidAssociation/DESCRIPTION
Modified  /trunk/madman/Rpacks/fastseg/DESCRIPTION
Modified  /trunk/madman/Rpacks/fdrame/DESCRIPTION
Modified  /trunk/madman/Rpacks/ffpe/DESCRIPTION
Modified  /trunk/madman/Rpacks/flagme/DESCRIPTION
Modified  /trunk/madman/Rpacks/flipflop/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowAI/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowBeads/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowBin/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCHIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCL/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowClean/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCyBar/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowDensity/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowFP/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowFit/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMatch/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMeans/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMerge/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowPeaks/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowPlots/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowQ/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowQB/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowTrans/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowType/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowUtils/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowVS/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowWorkspace/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowcatchR/DESCRIPTION
Modified  /trunk/madman/Rpacks/fmcsR/DESCRIPTION
Modified  /trunk/madman/Rpacks/focalCall/DESCRIPTION
Modified  /trunk/madman/Rpacks/frma/DESCRIPTION
Modified  /trunk/madman/Rpacks/frmaTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/gCMAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/gCMAPWeb/DESCRIPTION
Modified  /trunk/madman/Rpacks/gQTLBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/gQTLstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaga/DESCRIPTION
Modified  /trunk/madman/Rpacks/gage/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaggle/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaia/DESCRIPTION
Modified  /trunk/madman/Rpacks/garfield/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaucho/DESCRIPTION
Modified  /trunk/madman/Rpacks/gcatest/DESCRIPTION
Modified  /trunk/madman/Rpacks/gcrma/DESCRIPTION
Modified  /trunk/madman/Rpacks/gdsfmt/DESCRIPTION
Modified  /trunk/madman/Rpacks/geNetClassifier/DESCRIPTION
Modified  /trunk/madman/Rpacks/geecc/DESCRIPTION
Modified  /trunk/madman/Rpacks/genArise/DESCRIPTION
Modified  /trunk/madman/Rpacks/genbankr/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneRecommender/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneRxCluster/DESCRIPTION
Modified  /trunk/madman/Rpacks/genefilter/DESCRIPTION
Modified  /trunk/madman/Rpacks/genefu/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneplotter/DESCRIPTION
Modified  /trunk/madman/Rpacks/genoCN/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomation/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomeIntervals/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomes/DESCRIPTION
Modified  /trunk/madman/Rpacks/genoset/DESCRIPTION
Modified  /trunk/madman/Rpacks/genotypeeval/DESCRIPTION
Modified  /trunk/madman/Rpacks/genphen/DESCRIPTION
Modified  /trunk/madman/Rpacks/gespeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggbio/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggcyto/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggtree/DESCRIPTION
Modified  /trunk/madman/Rpacks/girafe/DESCRIPTION
Modified  /trunk/madman/Rpacks/globalSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/globaltest/DESCRIPTION
Modified  /trunk/madman/Rpacks/gmapR/DESCRIPTION
Modified  /trunk/madman/Rpacks/goProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/goTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/goseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/gpls/DESCRIPTION
Modified  /trunk/madman/Rpacks/gprege/DESCRIPTION
Modified  /trunk/madman/Rpacks/graph/DESCRIPTION
Modified  /trunk/madman/Rpacks/graphite/DESCRIPTION
Modified  /trunk/madman/Rpacks/groHMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/gtrellis/DESCRIPTION
Modified  /trunk/madman/Rpacks/gwascat/DESCRIPTION
Modified  /trunk/madman/Rpacks/h5vc/DESCRIPTION
Modified  /trunk/madman/Rpacks/hapFabia/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiAnnotator/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiReadsProcessor/DESCRIPTION
Modified  /trunk/madman/Rpacks/hierGWAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/hopach/DESCRIPTION
Modified  /trunk/madman/Rpacks/hpar/DESCRIPTION
Modified  /trunk/madman/Rpacks/htSeqTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/hyperdraw/DESCRIPTION
Modified  /trunk/madman/Rpacks/hypergraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/iASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/iBBiG/DESCRIPTION
Modified  /trunk/madman/Rpacks/iBMQ/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCARE/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCOBRA/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/iChip/DESCRIPTION
Modified  /trunk/madman/Rpacks/iClusterPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/iGC/DESCRIPTION
Modified  /trunk/madman/Rpacks/iPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/iSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ibh/DESCRIPTION
Modified  /trunk/madman/Rpacks/idiogram/DESCRIPTION
Modified  /trunk/madman/Rpacks/illuminaio/DESCRIPTION
Modified  /trunk/madman/Rpacks/imageHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/immunoClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/impute/DESCRIPTION
Modified  /trunk/madman/Rpacks/inSilicoDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/inSilicoMerging/DESCRIPTION
Modified  /trunk/madman/Rpacks/intansv/DESCRIPTION
Modified  /trunk/madman/Rpacks/interactiveDisplay/DESCRIPTION
Modified  /trunk/madman/Rpacks/interactiveDisplayBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/inveRsion/DESCRIPTION
Modified  /trunk/madman/Rpacks/iontree/DESCRIPTION
Modified  /trunk/madman/Rpacks/isobar/DESCRIPTION
Modified  /trunk/madman/Rpacks/isomiRs/DESCRIPTION
Modified  /trunk/madman/Rpacks/iterativeBMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/iterativeBMAsurv/DESCRIPTION
Modified  /trunk/madman/Rpacks/jmosaics/DESCRIPTION
Modified  /trunk/madman/Rpacks/joda/DESCRIPTION
Modified  /trunk/madman/Rpacks/kebabs/DESCRIPTION
Modified  /trunk/madman/Rpacks/keggorthology/DESCRIPTION
Modified  /trunk/madman/Rpacks/kimod/DESCRIPTION
Modified  /trunk/madman/Rpacks/lapmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/ldblock/DESCRIPTION
Modified  /trunk/madman/Rpacks/les/DESCRIPTION
Modified  /trunk/madman/Rpacks/lfa/DESCRIPTION
Modified  /trunk/madman/Rpacks/limma/DESCRIPTION
Modified  /trunk/madman/Rpacks/limmaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/lmdme/DESCRIPTION
Modified  /trunk/madman/Rpacks/logicFS/DESCRIPTION
Modified  /trunk/madman/Rpacks/logitT/DESCRIPTION
Modified  /trunk/madman/Rpacks/lol/DESCRIPTION
Modified  /trunk/madman/Rpacks/lpNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/lpsymphony/DESCRIPTION
Modified  /trunk/madman/Rpacks/lumi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mAPKL/DESCRIPTION
Modified  /trunk/madman/Rpacks/mBPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/mQTL.NMR/DESCRIPTION
Modified  /trunk/madman/Rpacks/maCorrPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/maPredictDSC/DESCRIPTION
Modified  /trunk/madman/Rpacks/maSigPro/DESCRIPTION
Modified  /trunk/madman/Rpacks/maanova/DESCRIPTION
Modified  /trunk/madman/Rpacks/macat/DESCRIPTION
Modified  /trunk/madman/Rpacks/made4/DESCRIPTION
Modified  /trunk/madman/Rpacks/maigesPack/DESCRIPTION
Modified  /trunk/madman/Rpacks/makecdfenv/DESCRIPTION
Modified  /trunk/madman/Rpacks/manta/DESCRIPTION
Modified  /trunk/madman/Rpacks/marray/DESCRIPTION
Modified  /trunk/madman/Rpacks/maskBAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/massiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/matchBox/DESCRIPTION
Modified  /trunk/madman/Rpacks/mcaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/mdgsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/mdqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/meshr/DESCRIPTION
Modified  /trunk/madman/Rpacks/messina/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaCCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaMS/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaX/DESCRIPTION
Modified  /trunk/madman/Rpacks/metabomxtr/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagene/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagenomeFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagenomeSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/metahdep/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/methVisual/DESCRIPTION
Modified  /trunk/madman/Rpacks/methyAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylMnM/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylPipe/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylumi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mgsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRLAB/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNAmeConverter/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNApath/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNAtap/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/microRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/minet/DESCRIPTION
Modified  /trunk/madman/Rpacks/minfi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mirIntegrator/DESCRIPTION
Modified  /trunk/madman/Rpacks/missMethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/mitoODE/DESCRIPTION
Modified  /trunk/madman/Rpacks/mmnet/DESCRIPTION
Modified  /trunk/madman/Rpacks/mogsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/monocle/DESCRIPTION
Modified  /trunk/madman/Rpacks/mosaics/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifRG/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifStack/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifbreakR/DESCRIPTION
Modified  /trunk/madman/Rpacks/msa/DESCRIPTION
Modified  /trunk/madman/Rpacks/msmsEDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/msmsTests/DESCRIPTION
Modified  /trunk/madman/Rpacks/multiClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/multiscan/DESCRIPTION
Modified  /trunk/madman/Rpacks/multtest/DESCRIPTION
Modified  /trunk/madman/Rpacks/muscle/DESCRIPTION
Modified  /trunk/madman/Rpacks/mvGST/DESCRIPTION
Modified  /trunk/madman/Rpacks/mygene/DESCRIPTION
Modified  /trunk/madman/Rpacks/myvariant/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzID/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ncdfFlow/DESCRIPTION
Modified  /trunk/madman/Rpacks/neaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/nem/DESCRIPTION
Modified  /trunk/madman/Rpacks/netbenchmark/DESCRIPTION
Modified  /trunk/madman/Rpacks/netbiov/DESCRIPTION
Modified  /trunk/madman/Rpacks/nethet/DESCRIPTION
Modified  /trunk/madman/Rpacks/netresponse/DESCRIPTION
Modified  /trunk/madman/Rpacks/networkBMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/nnNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/nondetects/DESCRIPTION
Modified  /trunk/madman/Rpacks/normalize450K/DESCRIPTION
Modified  /trunk/madman/Rpacks/npGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/nucleR/DESCRIPTION
Modified  /trunk/madman/Rpacks/nucleoSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/nudge/DESCRIPTION
Modified  /trunk/madman/Rpacks/occugene/DESCRIPTION
Modified  /trunk/madman/Rpacks/odseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/oligo/DESCRIPTION
Modified  /trunk/madman/Rpacks/oligoClasses/DESCRIPTION
Modified  /trunk/madman/Rpacks/omicade4/DESCRIPTION
Modified  /trunk/madman/Rpacks/oneChannelGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/ontoCAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/openCyto/DESCRIPTION
Modified  /trunk/madman/Rpacks/oposSOM/DESCRIPTION
Modified  /trunk/madman/Rpacks/oppar/DESCRIPTION
Modified  /trunk/madman/Rpacks/pRoloc/DESCRIPTION
Modified  /trunk/madman/Rpacks/pRolocGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/paircompviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/panp/DESCRIPTION
Modified  /trunk/madman/Rpacks/parglms/DESCRIPTION
Modified  /trunk/madman/Rpacks/parody/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathRender/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathVar/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathifier/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathview/DESCRIPTION
Modified  /trunk/madman/Rpacks/paxtoolsr/DESCRIPTION
Modified  /trunk/madman/Rpacks/pbcmc/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaExplorer/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaGoPromoter/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaMethods/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcot2/DESCRIPTION
Modified  /trunk/madman/Rpacks/pdInfoBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/pdmclass/DESCRIPTION
Modified  /trunk/madman/Rpacks/pepStat/DESCRIPTION
Modified  /trunk/madman/Rpacks/pepXMLTab/DESCRIPTION
Modified  /trunk/madman/Rpacks/phenoDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/phenoTest/DESCRIPTION
Modified  /trunk/madman/Rpacks/phyloseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/piano/DESCRIPTION
Modified  /trunk/madman/Rpacks/pickgene/DESCRIPTION
Modified  /trunk/madman/Rpacks/pint/DESCRIPTION
Modified  /trunk/madman/Rpacks/pkgDepTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/plateCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/plethy/DESCRIPTION
Modified  /trunk/madman/Rpacks/plgem/DESCRIPTION
Modified  /trunk/madman/Rpacks/plier/DESCRIPTION
Modified  /trunk/madman/Rpacks/plrs/DESCRIPTION
Modified  /trunk/madman/Rpacks/plw/DESCRIPTION
Modified  /trunk/madman/Rpacks/pmm/DESCRIPTION
Modified  /trunk/madman/Rpacks/podkat/DESCRIPTION
Modified  /trunk/madman/Rpacks/polyester/DESCRIPTION
Modified  /trunk/madman/Rpacks/ppiStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/pqsfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/prada/DESCRIPTION
Modified  /trunk/madman/Rpacks/prebs/DESCRIPTION
Modified  /trunk/madman/Rpacks/predictionet/DESCRIPTION
Modified  /trunk/madman/Rpacks/preprocessCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/proBAMr/DESCRIPTION
Modified  /trunk/madman/Rpacks/procoil/DESCRIPTION
Modified  /trunk/madman/Rpacks/profileScoreDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/prot2D/DESCRIPTION
Modified  /trunk/madman/Rpacks/proteinProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/proteoQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/psygenet2r/DESCRIPTION
Modified  /trunk/madman/Rpacks/puma/DESCRIPTION
Modified  /trunk/madman/Rpacks/pvac/DESCRIPTION
Modified  /trunk/madman/Rpacks/pvca/DESCRIPTION
Modified  /trunk/madman/Rpacks/pwOmics/DESCRIPTION
Modified  /trunk/madman/Rpacks/qcmetrics/DESCRIPTION
Modified  /trunk/madman/Rpacks/qpcrNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/qpgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/qrqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/quantro/DESCRIPTION
Modified  /trunk/madman/Rpacks/quantsmooth/DESCRIPTION
Modified  /trunk/madman/Rpacks/qusage/DESCRIPTION
Modified  /trunk/madman/Rpacks/qvalue/DESCRIPTION
Modified  /trunk/madman/Rpacks/r3Cseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/rBiopaxParser/DESCRIPTION
Modified  /trunk/madman/Rpacks/rCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/rGADEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rGREAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/rHVDM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rMAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/rRDP/DESCRIPTION
Modified  /trunk/madman/Rpacks/rSFFreader/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTANDEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTRM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTRMui/DESCRIPTION
Modified  /trunk/madman/Rpacks/rain/DESCRIPTION
Modified  /trunk/madman/Rpacks/rama/DESCRIPTION
Modified  /trunk/madman/Rpacks/randPack/DESCRIPTION
Modified  /trunk/madman/Rpacks/rbsurv/DESCRIPTION
Modified  /trunk/madman/Rpacks/rcellminer/DESCRIPTION
Modified  /trunk/madman/Rpacks/reb/DESCRIPTION
Modified  /trunk/madman/Rpacks/recoup/DESCRIPTION
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Modified  /trunk/madman/Rpacks/regioneR/DESCRIPTION
Modified  /trunk/madman/Rpacks/rfPred/DESCRIPTION
Modified  /trunk/madman/Rpacks/rgsepd/DESCRIPTION
Modified  /trunk/madman/Rpacks/rhdf5/DESCRIPTION
Modified  /trunk/madman/Rpacks/riboSeqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/rnaSeqMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/rnaseqcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/roar/DESCRIPTION
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Modified  /trunk/madman/Rpacks/rtracklayer/DESCRIPTION
Modified  /trunk/madman/Rpacks/sRAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/sSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/safe/DESCRIPTION
Modified  /trunk/madman/Rpacks/sagenhaft/DESCRIPTION
Modified  /trunk/madman/Rpacks/sangerseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/sapFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/saps/DESCRIPTION
Modified  /trunk/madman/Rpacks/savR/DESCRIPTION
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Modified  /trunk/madman/Rpacks/scsR/DESCRIPTION
Modified  /trunk/madman/Rpacks/segmentSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/seq2pathway/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqCNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqPattern/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqbias/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqplots/DESCRIPTION
Modified  /trunk/madman/Rpacks/sevenbridges/DESCRIPTION
Modified  /trunk/madman/Rpacks/shinyMethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/shinyTANDEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigPathway/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/siggenes/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigsquared/DESCRIPTION
Modified  /trunk/madman/Rpacks/similaRpeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/simpleaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/simulatorZ/DESCRIPTION
Modified  /trunk/madman/Rpacks/sincell/DESCRIPTION
Modified  /trunk/madman/Rpacks/sizepower/DESCRIPTION
Modified  /trunk/madman/Rpacks/skewr/DESCRIPTION
Modified  /trunk/madman/Rpacks/snapCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/snm/DESCRIPTION
Modified  /trunk/madman/Rpacks/snpStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/soGGi/DESCRIPTION
Modified  /trunk/madman/Rpacks/spade/DESCRIPTION
Modified  /trunk/madman/Rpacks/specL/DESCRIPTION
Modified  /trunk/madman/Rpacks/spikeLI/DESCRIPTION
Modified  /trunk/madman/Rpacks/spkTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/spliceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/spliceSites/DESCRIPTION
Modified  /trunk/madman/Rpacks/splicegear/DESCRIPTION
Modified  /trunk/madman/Rpacks/splineTimeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/splots/DESCRIPTION
Modified  /trunk/madman/Rpacks/spotSegmentation/DESCRIPTION
Modified  /trunk/madman/Rpacks/sscore/DESCRIPTION
Modified  /trunk/madman/Rpacks/sscu/DESCRIPTION
Modified  /trunk/madman/Rpacks/ssize/DESCRIPTION
Modified  /trunk/madman/Rpacks/ssviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/staRank/DESCRIPTION
Modified  /trunk/madman/Rpacks/stepNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/stepwiseCM/DESCRIPTION
Modified  /trunk/madman/Rpacks/subSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/supraHex/DESCRIPTION
Modified  /trunk/madman/Rpacks/survcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/sva/DESCRIPTION
Modified  /trunk/madman/Rpacks/switchBox/DESCRIPTION
Modified  /trunk/madman/Rpacks/synapter/DESCRIPTION
Modified  /trunk/madman/Rpacks/synlet/DESCRIPTION
Modified  /trunk/madman/Rpacks/systemPipeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/tRanslatome/DESCRIPTION
Modified  /trunk/madman/Rpacks/ternarynet/DESCRIPTION
Modified  /trunk/madman/Rpacks/tigre/DESCRIPTION
Modified  /trunk/madman/Rpacks/tilingArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/timecourse/DESCRIPTION
Modified  /trunk/madman/Rpacks/tkWidgets/DESCRIPTION
Modified  /trunk/madman/Rpacks/tofsims/DESCRIPTION
Modified  /trunk/madman/Rpacks/topGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/trackViewer/DESCRIPTION
Modified  /trunk/madman/Rpacks/tracktables/DESCRIPTION
Modified  /trunk/madman/Rpacks/transcriptR/DESCRIPTION
Modified  /trunk/madman/Rpacks/traseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/triform/DESCRIPTION
Modified  /trunk/madman/Rpacks/trigger/DESCRIPTION
Modified  /trunk/madman/Rpacks/trio/DESCRIPTION
Modified  /trunk/madman/Rpacks/triplex/DESCRIPTION
Modified  /trunk/madman/Rpacks/tspair/DESCRIPTION
Modified  /trunk/madman/Rpacks/tweeDEseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/twilight/DESCRIPTION
Modified  /trunk/madman/Rpacks/tximport/DESCRIPTION
Modified  /trunk/madman/Rpacks/unifiedWMWqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/variancePartition/DESCRIPTION
Modified  /trunk/madman/Rpacks/vbmp/DESCRIPTION
Modified  /trunk/madman/Rpacks/viper/DESCRIPTION
Modified  /trunk/madman/Rpacks/vsn/DESCRIPTION
Modified  /trunk/madman/Rpacks/vtpnet/DESCRIPTION
Modified  /trunk/madman/Rpacks/wateRmelon/DESCRIPTION
Modified  /trunk/madman/Rpacks/wavClusteR/DESCRIPTION
Modified  /trunk/madman/Rpacks/waveTiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/weaver/DESCRIPTION
Modified  /trunk/madman/Rpacks/webbioc/DESCRIPTION
Modified  /trunk/madman/Rpacks/widgetTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/xcms/DESCRIPTION
Modified  /trunk/madman/Rpacks/xmapbridge/DESCRIPTION
Modified  /trunk/madman/Rpacks/xps/DESCRIPTION
Modified  /trunk/madman/Rpacks/yaqcaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/zlibbioc/DESCRIPTION
Bump versions prior to creation of 3.3 branch
Revision: 117077
Author: t.silva
Date: 2016-05-03T20:58:45+00:00
Paths:
Modified  /trunk/madman/Rpacks/TCGAbiolinks/NAMESPACE
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGADownload.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGAInternal.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGAupdate.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGAvisualize.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/methylation.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/man/TCGAvisualize_Heatmap.Rd
Merge branch 'master' into devel

* master: (863 commits)
  Small fixes
  Improving verifications in DMR
  Fixing heatmap
  Improving getFileNames
  Fixing biomart dependency
  db update
  Adding some verification steps in the DMR function
  Fixing doc
  Adding possibility to change colors of % in profile plot
  Bug fix
  Improving EA barplot
  Improving graphs/vignette
  Fixing adding names
  ordering by thrshold is this solving the color problem?
  BUG FIX
  Verifying arguments
  Highlighting a genes/probes in volcano plot
  fixing doc
  Fixing typo error
  Improving case 4 code.
  ...

From: tiagochst <tiagochst@gmail.com>
Revision: 117076
Author: d.tenenbaum
Date: 2016-05-03T20:57:26+00:00
Paths:
Modified  /trunk/madman/Rpacks/flowClean/DESCRIPTION
make version # appropriate for devel
Revision: 117075
Author: r.castelo
Date: 2016-05-03T20:55:42+00:00
Paths:
Modified  /trunk/madman/Rpacks/VariantFiltering/DESCRIPTION
version bump.
Revision: 117074
Author: w.luo
Date: 2016-05-03T20:38:52+00:00
Paths:
Modified  /trunk/madman/Rpacks/pathview/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathview/R/zzz.R
new version 1.11.4
Revision: 117072
Author: r.otto
Date: 2016-05-03T18:35:24+00:00
Paths:
Modified  /trunk/madman/Rpacks/Uniquorn/DESCRIPTION
Modified  /trunk/madman/Rpacks/Uniquorn/inst/NEWS.Rd
Minor stats changes
Revision: 117069
Author: w.souza
Date: 2016-05-03T16:48:21+00:00
Paths:
Modified  /trunk/madman/Rpacks/Rqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rqc/NAMESPACE
Modified  /trunk/madman/Rpacks/Rqc/R/Rqc-package.R
Modified  /trunk/madman/Rpacks/Rqc/R/rqcQA-methods.R
Modified  /trunk/madman/Rpacks/Rqc/R/utils.R
Modified  /trunk/madman/Rpacks/Rqc/inst/extdata/Rqc.rda
Added total reads of FASTQ file

From: Welliton Souza <well309@gmail.com>
Revision: 117068
Author: h.corradabravo
Date: 2016-05-03T14:37:49+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizrStandalone/DESCRIPTION
update version dependencies

From: Hector Corrada Bravo <hcorrada@gmail.com>

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