Introduction to R and Bioconductor

Seattle, USA

2010-12-09 ~ 2010-12-10

Instructors

• Martin Morgan
• Hervé Pagès
• Marc Carlson
• Nishant Gopalakrishnan
• Chao-Jen Wong
• Valerie Obenchain
• Dan Tenenbaum

Description

This workshop is designed to introduce new users to essential R / Bioconductor tools useful in high throughput analysis. Topics are covered at a very high level to provide participants with an overview of available tools; individual topics are not covered in detail.

Materials

Installing the course package on your computer

We will use R version 2.12.0. To install this version of R, visit (Windows, Mac OS, install from source or binary for Linux).
The course uses additional R and Bioconductor packages. To install these packages, start R and cut and paste the following command into your R session:

source("http://bioconductor.org/course-packages/install-SeattleIntro2010.R")

Talks

Thursday Morning

Introduction to R

Introduction to R - Lab

Introduction to Bioconductor

Introduction to Bioconductor - Lab

Thursday Afternoon

Microarray Analysis

Microarray Analysis - Lab

Annotation

Friday Morning

Sequence Analysis

Sequence Analysis - Lab

Sequence Differential Representation

Friday Afternoon

DNA Sequences and Ranges

Using the GenomicFeatures package