To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BADER")

In most cases, you don't need to download the package archive at all.

BADER

 

   

This is the development version of BADER; for the stable release version, see BADER.

Bayesian Analysis of Differential Expression in RNA Sequencing Data

Bioconductor version: Development (3.4)

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Author: Andreas Neudecker, Matthias Katzfuss

Maintainer: Andreas Neudecker <a.neudecker at arcor.de>

Citation (from within R, enter citation("BADER")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BADER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BADER")

 

PDF BADER.pdf
PDF   Reference Manual

Details

biocViews DifferentialExpression, RNASeq, SAGE, Sequencing, Software
Version 1.11.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL-2
Depends
Imports
LinkingTo
Suggests pasilla (>= 0.2.10)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source BADER_1.11.0.tar.gz
Windows Binary BADER_1.11.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/BADER
Package Short Url http://bioconductor.org/packages/BADER/
Package Downloads Report Download Stats

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