To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHbase")

In most cases, you don't need to download the package archive at all.

CGHbase

 

   

This is the development version of CGHbase; for the stable release version, see CGHbase.

CGHbase: Base functions and classes for arrayCGH data analysis.

Bioconductor version: Development (3.4)

Contains functions and classes that are needed by arrayCGH packages.

Author: Sjoerd Vosse, Mark van de Wiel

Maintainer: Mark van de Wiel <mark.vdwiel at vumc.nl>

Citation (from within R, enter citation("CGHbase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CGHbase")

Documentation

PDF   Reference Manual

Details

biocViews CopyNumberVariation, Infrastructure, Microarray, Software
Version 1.33.0
In Bioconductor since BioC 2.3 (R-2.8) (7.5 years)
License GPL
Depends R (>= 2.10), methods, Biobase(>= 2.5.5), marray
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/tgac-vumc/CGHbase
BugReports https://github.com/tgac-vumc/CGHbase/issues
Depends On Me CGHcall, CGHnormaliter, CGHregions, GeneBreak, sigaR
Imports Me CGHnormaliter, plrs, QDNAseq
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CGHbase_1.33.0.tar.gz
Windows Binary CGHbase_1.33.0.zip
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CGHbase
Package Short Url http://bioconductor.org/packages/CGHbase/
Package Downloads Report Download Stats

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