Add-on to CellNOptR: Discretized time treatments

Bioconductor version: Development (3.0)

This add-on to the package CellNOptR handles time-course data, as opposed to steady state data in CellNOptR. It scales the simulation step to allow comparison and model fitting for time-course data. Future versions will optimize delays and strengths for each edge.

Author: A. MacNamara

Maintainer: A. MacNamara <aidan.macnamara at>

To install this package, start R and enter:


Citation (from within R, enter citation("CNORdt")):


PDF R Script Using multiple time points to train logic models to data
PDF   Reference Manual


biocViews CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version 1.7.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL-2
Depends R (>= 1.8.0), CellNOptR(>= 0.99), abind
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source CNORdt_1.7.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CNORdt_1.7.0.tgz
Mac OS X 10.9 (Mavericks) CNORdt_1.7.0.tgz
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