CellNOptR

Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.

Bioconductor version: Development (3.0)

This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.

Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve

Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CellNOptR")

Citation (from within R, enter citation("CellNOptR")):

Documentation

PDF R Script Main vignette:Playing with networks using CellNOptR
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse
Version 1.11.1
In Bioconductor since BioC 2.9 (R-2.14)
License GPL-3
Depends R (>= 2.15.0), RBGL, graph, methods, hash, ggplot2, RCurl, Rgraphviz, XML
Imports
Suggests RUnit, BiocGenerics, igraph
System Requirements Graphviz version >= 2.2
URL
Depends On Me CNORdt, CNORfeeder, CNORfuzzy, CNORode
Imports Me
Suggests Me MEIGOR

Package Downloads

Package Source CellNOptR_1.11.1.tar.gz
Windows Binary CellNOptR_1.11.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) CellNOptR_1.11.1.tgz
Mac OS X 10.9 (Mavericks) CellNOptR_1.11.1.tgz
Package Downloads Report Download Stats

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