ComplexHeatmap

DOI: 10.18129/B9.bioc.ComplexHeatmap    

This is the development version of ComplexHeatmap; for the stable release version, see ComplexHeatmap.

Making Complex Heatmaps

Bioconductor version: Development (3.8)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ComplexHeatmap", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")

 

HTML R Script 1. Introduction to ComplexHeatmap package
HTML R Script 2. Making a single heatmap
HTML R Script 3. Making a list of Heatmaps
HTML R Script 4. Heatmap Annotations
HTML R Script 5. Heatmap and Annotation Legends
HTML R Script 6. Heatmap Decoration
HTML R Script 7. Interactive with Heatmaps
HTML R Script 8. OncoPrint
HTML R Script 9. More Examples
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Sequencing, Software, Visualization
Version 1.19.2
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.1.0)
LinkingTo
Suggests testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1)
SystemRequirements
Enhances
URL https://github.com/jokergoo/ComplexHeatmap
Depends On Me EnrichedHeatmap, recoup
Imports Me BiocOncoTK, CATALYST, cytofWorkflow, DEComplexDisease, DEGreport, DEP, diffcyt, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, LineagePulse, maftools, MWASTools, PathoStat, singleCellTK, TCGAbiolinks, TCGAWorkflow, YAPSA
Suggests Me gtrellis, HilbertCurve
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComplexHeatmap_1.19.2.tar.gz
Windows Binary ComplexHeatmap_1.19.2.zip
Mac OS X 10.11 (El Capitan) ComplexHeatmap_1.19.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/ComplexHeatmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ComplexHeatmap
Package Short Url http://bioconductor.org/packages/ComplexHeatmap/
Package Downloads Report Download Stats

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