To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DEGreport")

In most cases, you don't need to download the package archive at all.

DEGreport

 

   

This is the development version of DEGreport; for the stable release version, see DEGreport.

Report of DEG analysis

Bioconductor version: Development (3.4)

Creation of a HTML report of differential expression analyses of count data. It integrates some of the code mentioned in DESeq2 and edgeR vignettes, and report a ranked list of genes according to the fold changes mean and variability for each selected gene.

Author: Lorena Pantano

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Citation (from within R, enter citation("DEGreport")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DEGreport")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGreport")

 

PDF R Script DEGreport
PDF   Reference Manual

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Software, Visualization
Version 1.9.8
In Bioconductor since BioC 3.0 (R-3.1) (2 years)
License MIT + file LICENSE
Depends R (>= 3.2.0), quantreg
Imports utils, methods, ggplot2, Nozzle.R1, coda, edgeR, cluster, logging, dplyr, tidyr, reshape, pheatmap, grid, gridExtra, knitr, grDevices, stats
LinkingTo
Suggests biomaRt, RUnit, BiocStyle, BiocGenerics, org.Hs.eg.db, DESeq2, AnnotationDbi, BiocParallel
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DEGreport_1.9.8.tar.gz
Windows Binary DEGreport_1.9.8.zip
Mac OS X 10.9 (Mavericks) DEGreport_1.9.8.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/DEGreport
Package Short Url http://bioconductor.org/packages/DEGreport/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: