Differential Binding Analysis of ChIP-Seq peak data

Bioconductor version: Development (3.0)

Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

Author: Rory Stark<rory.stark at cruk.cam.ac.uk>, Gordon Brown <gordon.brown at cruk.cam.ac.uk>

Maintainer: Rory Stark<rory.stark at cruk.cam.ac.uk>

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PDF R Script DiffBind: Differential binding analysis of ChIP-Seq peak data
PDF   Reference Manual
Text   NEWS


biocViews ChIPSeq, Sequencing, Software
Version 1.11.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.15.0), GenomicRanges, limma, GenomicAlignments
Imports RColorBrewer, amap, edgeR(>= 2.3.58), gplots, grDevices, stats, utils, IRanges, zlibbioc, lattice
Suggests DESeq, Rsamtools, DESeq2, BiocStyle
System Requirements
Depends On Me ChIPQC, MMDiff
Imports Me
Suggests Me

Package Downloads

Package Source DiffBind_1.11.0.tar.gz
Windows Binary DiffBind_1.11.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DiffBind_1.11.0.tgz
Mac OS X 10.9 (Mavericks)
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