| Depends On Me |
AffiXcan, alabaster.se, AllelicImbalance, atena, bambu, betaHMM, BiocSklearn, BiSeq, bnbc, broadSeq, bsseq, CAGEfightR, clusterExperiment, CoreGx, coseq, csaw, CSSQ, DaMiRseq, deepSNV, DeMixT, DESeq2, DEXSeq, DiffBind, diffcoexp, diffHic, dinoR, divergence, DMCFB, DMCHMM, EnrichmentBrowser, epigenomix, evaluomeR, EventPointer, ExperimentSubset, ExpressionAtlas, extraChIPs, FEAST, FRASER, GenomicAlignments, GenomicFiles, GenomicSuperSignature, GRmetrics, GSEABenchmarkeR, HelloRanges, hermes, HERON, HiCDOC, hipathia, InteractionSet, IntEREst, iSEE, iSEEhex, iSEEhub, iSEEindex, ISLET, isomiRs, ivygapSE, lefser, LimROTS, lipidr, LoomExperiment, lute, Macarron, made4, MatrixQCvis, MBASED, methodical, methrix, methylPipe, MetNet, MGnifyR, mia, miaViz, MICSQTL, minfi, moanin, mpra, MultiAssayExperiment, multistateQTL, NADfinder, NBAMSeq, NewWave, orthos, OUTRIDER, padma, PDATK, phenomis, PhIPData, profileplyr, PRONE, qmtools, qsvaR, QTLExperiment, recount, recount3, ReducedExperiment, RegEnrich, REMP, RFLOMICS, ROCpAI, rqt, runibic, Scale4C, scAnnotatR, scGPS, scone, screenCounter, scTreeViz, SDAMS, sechm, SeqGate, SEtools, SGSeq, signatureSearch, SingleCellExperiment, SingleR, soGGi, spillR, spqn, ssPATHS, stageR, survtype, TENxIO, tidyCoverage, tidySummarizedExperiment, TissueEnrich, TREG, UMI4Cats, VanillaICE, VariantAnnotation, VariantExperiment, velociraptor, weitrix, yamss, zinbwave, airway, BioPlex, bodymapRat, celldex, curatedAdipoChIP, curatedAdipoRNA, curatedMetagenomicData, fission, GSVAdata, HDCytoData, HighlyReplicatedRNASeq, HMP16SData, MethylSeqData, MicrobiomeBenchmarkData, microbiomeDataSets, microRNAome, MouseGastrulationData, MouseThymusAgeing, ObMiTi, sampleClassifierData, scMultiome, spatialDmelxsim, spqnData, timecoursedata, tuberculosis, TumourMethData, DRomics, OncoSubtype, ordinalbayes |
| Imports Me |
ADAM, ADImpute, aggregateBioVar, airpart, alabaster.sfe, ALDEx2, animalcules, anota2seq, APAlyzer, apeglm, APL, appreci8R, ASICS, ASURAT, ATACseqTFEA, AUCell, autonomics, awst, Banksy, barbieQ, barcodetrackR, BASiCS, BASiCStan, batchelor, BatchQC, BatchSVG, BayesSpace, bayNorm, BBCAnalyzer, beer, BERT, bettr, BioGA, BioNERO, biosigner, biotmle, biovizBase, biscuiteer, BiSeq, blacksheepr, BloodGen3Module, BreastSubtypeR, BulkSignalR, BUMHMM, BUScorrect, BUSseq, CaDrA, CAGEr, CARDspa, CATALYST, CatsCradle, cBioPortalData, ccfindR, ccImpute, CDI, celda, CelliD, CellMixS, CellTrails, censcyt, Cepo, CeTF, CHETAH, ChIPpeakAnno, chromVAR, CiteFuse, CleanUpRNAseq, clustifyr, clustSIGNAL, cmapR, CNVfilteR, CNVRanger, CoGAPS, comapr, combi, concordexR, condiments, consensusDE, consICA, CopyNumberPlots, Coralysis, corral, countsimQC, CPSM, crupR, CTexploreR, CTSV, CuratedAtlasQueryR, cydar, cypress, cytofQC, cytoKernel, cytomapper, cytoviewer, DAMEfinder, dandelionR, debCAM, debrowser, decompTumor2Sig, decontX, DeconvoBuddies, DEFormats, DEGreport, DELocal, deltaCaptureC, demuxSNP, DEP, DEScan2, DESpace, destiny, DEWSeq, diffcyt, DifferentialRegulation, diffUTR, Dino, DiscoRhythm, distinct, dittoSeq, DMRcate, DNEA, DominoEffect, doppelgangR, doseR, dreamlet, DropletUtils, Dune, easyRNASeq, eisaR, ELMER, epigraHMM, EpiMix, epimutacions, epiregulon, epiregulon.extra, epistack, epivizrData, escape, escheR, EWCE, fcScan, FeatSeekR, findIPs, FindIT2, fishpond, FLAMES, FuseSOM, G4SNVHunter, GARS, gCrisprTools, gDNAx, gDRcore, gDRimport, gDRutils, gemma.R, GeneTonic, genomicInstability, GEOquery, GeoTcgaData, getDEE2, geyser, ggbio, ggsc, ggspavis, gINTomics, Glimma, glmGamPoi, glmSparseNet, GRaNIE, GreyListChIP, gscreend, GSVA, gwasurvivr, GWENA, HarmonizR, HiContacts, HiCParser, HoloFoodR, hoodscanR, hummingbird, HybridExpress, iasva, icetea, ideal, IFAA, IgGeneUsage, ILoReg, imcRtools, iNETgrate, infercnv, INSPEcT, iSEEde, iSEEfier, iSEEpathways, iSEEtree, iSEEu, IsoBayes, IsoformSwitchAnalyzeR, kmcut, LACE, lemur, limpca, lineagespot, lionessR, LipidTrend, lisaClust, maaslin3, MAI, mariner, marr, mastR, mbkmeans, MBQN, mCSEA, MEAL, MEAT, MEB, MetaboAnnotation, MetaboDynamics, metabolomicsWorkbenchR, MetaNeighbor, metaseqR2, MethReg, MethylAid, methyLImp2, methylscaper, methylumi, miaDash, miaSim, MicrobiotaProcess, midasHLA, miloR, MinimumDistance, miRSM, missMethyl, mist, MLInterfaces, MLSeq, mobileRNA, monaLisa, MoonlightR, mosdef, motifbreakR, motifmatchr, MotifPeeker, MPAC, MPRAnalyze, MsExperiment, MsFeatures, msgbsR, mspms, MSPrep, msqrob2, MuData, MultiDataSet, MultiRNAflow, multiWGCNA, mumosa, muscat, musicatk, MWASTools, NanoMethViz, Nebulosa, NetActivity, netSmooth, nipalsMCIA, nnSVG, NormalyzerDE, oligoClasses, omicRexposome, omicsPrint, omicsViewer, omXplore, oncomix, ontoProc, ORFik, OVESEG, PAIRADISE, pairedGSEA, pairkat, pcaExplorer, peco, PepSetTest, pgxRpi, PharmacoGx, phenopath, PhosR, pipeComp, Pirat, PIUMA, planttfhunter, plyxp, pmp, poem, PolySTest, POMA, proActiv, proDA, psichomics, PureCN, QFeatures, qsmooth, quantiseqr, R453Plus1Toolbox, RadioGx, raer, RaggedExperiment, RareVariantVis, RcisTarget, ReactomeGSA, receptLoss, RegionalST, regionReport, regsplice, rgsepd, rifi, rifiComparative, Rmmquant, RNAAgeCalc, RNAsense, roar, RolDE, ropls, rScudo, RTCGAToolbox, RTN, RUCova, saseR, satuRn, SBGNview, SC3, SCArray, SCArray.sat, scater, scBFA, scCB2, scDblFinder, scDD, scDDboost, scDesign3, scDiagnostics, scds, scHOT, scider, scmap, scMerge, scMET, scmeth, scMultiSim, SCnorm, scoreInvHap, scp, scPipe, scQTLtools, scran, scReClassify, scRepertoire, scruff, scry, scTensor, scTGIF, scuttle, scviR, segmenter, seqCAT, SEraster, sesame, SGCP, shinyDSP, sigFeature, signifinder, SigsPack, SimBu, simPIC, simpleSeg, SingleCellAlleleExperiment, singscore, slalom, slingshot, smartid, smoothclust, snapcount, SNPhood, sosta, spacexr, Spaniel, SpaNorm, spaSim, SpatialCPie, spatialDE, SpatialExperiment, spatialFDA, SpatialFeatureExperiment, spatialHeatmap, spatialSimGP, spatzie, SPIAT, spicyR, splatter, SpliceWiz, SplicingFactory, SplineDV, spoon, SpotClean, SpotSweeper, srnadiff, sSNAPPY, StabMap, standR, Statial, stJoincount, struct, StructuralVariantAnnotation, supersigs, SurfR, SVMDO, SVP, switchde, systemPipeR, systemPipeTools, TBSignatureProfiler, TCGAbiolinks, TCGAutils, TCseq, TENET, tenXplore, TFutils, tidybulk, tidySingleCellExperiment, tidySpatialExperiment, TOAST, tomoda, ToxicoGx, tpSVG, tradeSeq, TrajectoryUtils, transformGamPoi, transmogR, treeclimbR, TreeSummarizedExperiment, Trendy, tricycle, TSCAN, TTMap, TVTB, tximeta, UCell, VAExprs, VariantFiltering, VDJdive, vidger, VisiumIO, visiumStitched, vmrseq, Voyager, wpm, XAItest, xCell2, xcms, XeniumIO, xenLite, zellkonverter, zFPKM, zitools, BloodCancerMultiOmics2017, brgedata, CLLmethylation, COSMIC.67, curatedTCGAData, easierData, emtdata, FieldEffectCrc, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, GSE13015, HCATonsilData, HiBED, HMP2Data, homosapienDEE2CellScore, IHWpaper, LegATo, MerfishData, MetaGxBreast, MetaScope, orthosData, scRNAseq, SingleCellMultiModal, spatialLIBD, TabulaMurisSenisData, TCGAWorkflowData, TENET.ExperimentHub, TENxXeniumData, ExpHunterSuite, fluentGenomics, autoGO, DWLS, imcExperiment, karyotapR, MetAlyzer, microbial, multimedia, PlasmaMutationDetector, RCPA, RNAseqQC, SCIntRuler, scPipeline, SCRIP, scROSHI, SpatialDDLS, treediff, VSOLassoBag |
