To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EBImage")

In most cases, you don't need to download the package archive at all.

EBImage

 

   

This is the development version of EBImage; for the stable release version, see EBImage.

Image processing and analysis toolbox for R

Bioconductor version: Development (3.4)

EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.

Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais

Maintainer: Andrzej Oleś <andrzej.oles at embl.de>

Citation (from within R, enter citation("EBImage")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EBImage")

Documentation

HTML R Script Introduction to EBImage
PDF   Reference Manual
Text   NEWS

Details

biocViews Software, Visualization
Version 4.15.3
In Bioconductor since BioC 1.8 (R-2.3) (10 years)
License LGPL
Depends
Imports BiocGenerics(>= 0.7.1), methods, graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7), utils
LinkingTo
Suggests BiocStyle, digest, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/aoles/EBImage
BugReports https://github.com/aoles/EBImage/issues
Depends On Me CRImage, FISHalyseR, flowcatchR, imageHTS
Imports Me CONFESS, flowCHIC
Suggests Me ggtree, HilbertVis, tofsims
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source EBImage_4.15.3.tar.gz
Windows Binary EBImage_4.15.3.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks) EBImage_4.15.3.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/EBImage
Package Short Url http://bioconductor.org/packages/EBImage/
Package Downloads Report Download Stats

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