BiocGenerics

S4 generic functions for Bioconductor

Bioconductor version: Development (3.0)

S4 generic functions needed by many Bioconductor packages.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("BiocGenerics")

To cite this package in a publication, start R and enter:

    citation("BiocGenerics")

Documentation

PDF   Reference Manual

Details

biocViews Infrastructure, Software
Version 0.11.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends methods, utils, graphics, stats, parallel
Imports methods, utils, graphics, stats, parallel
Suggests Biobase, IRanges, GenomicRanges, AnnotationDbi, oligoClasses, oligo, affyPLM, flowClust, affy, RUnit, DESeq2
System Requirements
URL
Depends On Me affy, affyPLM, altcdfenvs, AnnotationDbi, AnnotationForge, beadarray, Biobase, Biostrings, BSgenome, bsseq, Category, categoryCompare, chipseq, ChIPseqR, ChromHeatMap, cleanUpdTSeq, cn.mops, codelink, copynumber, CopyNumber450k, CRISPRseek, cummeRbund, DESeq, dexus, EDASeq, ensemblVEP, flowQ, geneplotter, genomeIntervals, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, Genominator, genoset, ggbio, GSEABase, Gviz, htSeqTools, interactiveDisplay, IRanges, minfi, MotIV, MSnbase, nucleR, oligo, PICS, PSICQUIC, PWMEnrich, REDseq, Repitools, rMAT, rsbml, rSFFreader, S4Vectors, scsR, ShortRead, simpleaffy, SplicingGraphs, TEQC, tigre, TSSi, UNDO, VariantAnnotation, VariantFiltering, virtualArray, xcms, XVector
Imports Me affyPLM, AllelicImbalance, annmap, annotate, AnnotationDbi, AnnotationForge, AnnotationHub, ArrayExpressHTS, bigmemoryExtras, biocGraph, BiocParallel, Biostrings, biosvd, biovizBase, BiSeq, BSgenome, bumphunter, Category, cghMCR, ChemmineOB, ChemmineR, chipenrich.data, ChIPpeakAnno, ChIPQC, ChIPseeker, chipseq, cn.farms, cn.mops, crlmm, cummeRbund, curatedOvarianData, DESeq2, DEXSeq, DREAM4, DrugVsDisease, easyRNASeq, EBImage, EDASeq, eiR, eisa, epigenomix, fastseg, ffpe, flowBin, flowClust, flowCore, flowFP, flowQ, flowStats, flowWorkspace, fmcsR, frma, gCMAP, gCMAPWeb, GenomicAlignments, GenomicRanges, GGBase, GGtools, GOTHiC, graph, GSVA, gwascat, hopach, HTSeqGenie, intansv, IRanges, KCsmart, KEGGdzPathwaysGEO, LVSmiRNA, metaMS, methylumi, MinimumDistance, MiRaGE, MotifDb, npGSEA, nucleR, oligo, oligoClasses, OrganismDbi, pcaMethods, PING, plrs, prada, ProCoNA, pRoloc, QuasR, R453Plus1Toolbox, RCytoscape, REDseq, RefNet, ReportingTools, RGalaxy, Ringo, rMAT, Rsamtools, rsbml, rtracklayer, S4Vectors, simpleaffy, SLGI, snpStats, spliceSites, SplicingGraphs, Streamer, triform, TSSi, unifiedWMWqPCR, UniProt.ws, VariantTools, XDE, XVector
Suggests Me ArrayTV, ASSET, bigmemoryExtras, BiocCheck, BiocInstaller, BiocStyle, BiRewire, bumphunter, CAFE, CAMERA, ccrepe, CellNOptR, CexoR, ChIPXpress, clipper, clonotypeR, CNEr, CNORfeeder, CNORfuzzy, cobindR, ConnectivityMap, dagLogo, DBChIP, DMRcate, DNaseR, FGNet, flowCL, GENE.E, GeneNetworkBuilder, GeneOverlap, geneRxCluster, geNetClassifier, GenomeInfoDb, GOstats, GraphPAC, GWASTools, iClusterPlus, illuminaio, INPower, inSilicoMerging, KEGGREST, massiR, MeSH.AOR.db, MeSH.db, MeSH.PCR.db, MeSHDbi, metaseqR, Mirsynergy, motifStack, NetSAM, nondetects, org.MeSH.Aca.db, org.MeSH.Aga.PEST.db, org.MeSH.Ame.db, org.MeSH.Aml.db, org.MeSH.Ana.db, org.MeSH.Ani.FGSC.db, org.MeSH.Ath.db, org.MeSH.Atu.K84.db, org.MeSH.Bfl.db, org.MeSH.Bsu.168.db, org.MeSH.Bsu.Bsn5.db, org.MeSH.Bsu.RONN1.db, org.MeSH.Bsu.TUB10.db, org.MeSH.Bsu.W23.db, org.MeSH.Bta.db, org.MeSH.Cal.SC5314.db, org.MeSH.Cbr.db, org.MeSH.Cel.db, org.MeSH.Cfa.db, org.MeSH.Cin.db, org.MeSH.Cja.db, org.MeSH.Cpo.db, org.MeSH.Cre.db, org.MeSH.Dan.db, org.MeSH.Dda.3937.db, org.MeSH.Ddi.AX4.db, org.MeSH.Der.db, org.MeSH.Dgr.db, org.MeSH.Dme.db, org.MeSH.Dmo.db, org.MeSH.Dpe.db, org.MeSH.Dre.db, org.MeSH.Dse.db, org.MeSH.Dsi.db, org.MeSH.Dvi.db, org.MeSH.Dya.db, org.MeSH.Eco.536.db, org.MeSH.Eco.55989.db, org.MeSH.Eco.APEC01.db, org.MeSH.Eco.B.REL606.db, org.MeSH.Eco.BW2952.db, org.MeSH.Eco.CFT073.db, org.MeSH.Eco.E24377A.db, org.MeSH.Eco.ED1a.db, org.MeSH.Eco.HS.db, org.MeSH.Eco.IAI1.db, org.MeSH.Eco.IAI39.db, org.MeSH.Eco.K12.DH10B.db, org.MeSH.Eco.K12.MG1655.db, org.MeSH.Eco.KO11FL.db, org.MeSH.Eco.O103.H2.12009.db, org.MeSH.Eco.O111.H.11128.db, org.MeSH.Eco.O127.H6.E2348.69.db, org.MeSH.Eco.O157.H7.EC4115.db, org.MeSH.Eco.O157.H7.EDL933.db, org.MeSH.Eco.O157.H7.Sakai.db, org.MeSH.Eco.O157.H7.TW14359.db, org.MeSH.Eco.O26.H11.11368.db, org.MeSH.Eco.O26.H7.CB9615.db, org.MeSH.Eco.S88.db, org.MeSH.Eco.SE11.db, org.MeSH.Eco.SMS35.db, org.MeSH.Eco.UMN026.db, org.MeSH.Eco.UTI89.db, org.MeSH.Eqc.db, org.MeSH.Gga.db, org.MeSH.Gma.db, org.MeSH.Hsa.db, org.MeSH.Laf.db, org.MeSH.Lma.db, org.MeSH.Mdo.db, org.MeSH.Mes.db, org.MeSH.Mga.db, org.MeSH.Miy.db, org.MeSH.Mml.db, org.MeSH.Mmu.db, org.MeSH.Mtr.db, org.MeSH.Nle.db, org.MeSH.Oan.db, org.MeSH.Ocu.db, org.MeSH.Oni.db, org.MeSH.Osa.db, org.MeSH.Pab.db, org.MeSH.Pae.LESB58.db, org.MeSH.Pae.PA14.db, org.MeSH.Pae.PA7.db, org.MeSH.Pae.PAO1.db, org.MeSH.Pfa.3D7.db, org.MeSH.Pto.db, org.MeSH.Ptr.db, org.MeSH.Rno.db, org.MeSH.Sau.COL.db, org.MeSH.Sau.ED98.db, org.MeSH.Sau.M013.db, org.MeSH.Sau.MRSA252.db, org.MeSH.Sau.MSHR1132.db, org.MeSH.Sau.MSSA476.db, org.MeSH.Sau.Mu3.db, org.MeSH.Sau.Mu50.db, org.MeSH.Sau.MW2.db, org.MeSH.Sau.N315.db, org.MeSH.Sau.Newman.db, org.MeSH.Sau.RF122.db, org.MeSH.Sau.USA300FPR3757.db, org.MeSH.Sau.USA300TCH1516.db, org.MeSH.Sau.VC40.db, org.MeSH.Sce.S288c.db, org.MeSH.Sco.A32.db, org.MeSH.Sil.db, org.MeSH.Spo.972h.db, org.MeSH.Spu.db, org.MeSH.Ssc.db, org.MeSH.Syn.db, org.MeSH.Tbr.9274.db, org.MeSH.Tgo.ME49.db, org.MeSH.Tgu.db, org.MeSH.Vvi.db, org.MeSH.Xla.db, org.MeSH.Xtr.db, org.MeSH.Zma.db, PathNet, pathview, PhenStat, plethy, rBiopaxParser, Rcade, Rcpi, Rgraphviz, roar, ROntoTools, rpx, RTN, rTRM, sangerseqR, SANTA, sapFinder, SeqArray, SeqVarTools, SpacePAC, STRINGdb, TCC, TFBSTools, trackViewer

Package Downloads

Package Source BiocGenerics_0.11.0.tar.gz
Windows Binary BiocGenerics_0.11.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) BiocGenerics_0.11.0.tgz
Mac OS X 10.9 (Mavericks)
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