DOI: 10.18129/B9.bioc.GWASTools    

This is the development version of GWASTools; for the stable release version, see GWASTools.

Tools for Genome Wide Association Studies

Bioconductor version: Development (3.7)

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

Author: Stephanie M. Gogarten, Cathy Laurie, Tushar Bhangale, Matthew P. Conomos, Cecelia Laurie, Michael Lawrence, Caitlin McHugh, Ian Painter, Xiuwen Zheng, Jess Shen, Rohit Swarnkar, Adrienne Stilp, Sarah Nelson

Maintainer: Stephanie M. Gogarten <sdmorris at>, Adrienne Stilp <amstilp at>

Citation (from within R, enter citation("GWASTools")):


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PDF R Script Data formats in GWASTools
PDF R Script GWAS Data Cleaning
PDF R Script Preparing Affymetrix Data
PDF   Reference Manual
Text   NEWS


biocViews GeneticVariability, Microarray, QualityControl, SNP, Software
Version 1.25.3
In Bioconductor since BioC 2.9 (R-2.14) (6.5 years)
License Artistic-2.0
Depends Biobase
Imports graphics, stats, utils, methods, gdsfmt, DBI, RSQLite, GWASExactHW, DNAcopy, survival, sandwich, lmtest, logistf, quantsmooth
Suggests ncdf4, GWASdata, BiocGenerics, RUnit, Biostrings, GenomicRanges, IRanges, SNPRelate, snpStats, S4Vectors, VariantAnnotation
Depends On Me GWASdata
Imports Me GENESIS
Suggests Me podkat
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