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This is the development version of GeneExpressionSignature; for the stable release version, see GeneExpressionSignature.

Gene Expression Signature based Similarity Metric

Bioconductor version: Development (3.0)

This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.

Author: Yang Cao

Maintainer: Yang Cao <yiluheihei at>, Fei Li <pittacus at>,Lu Han <hanl8910 at>

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PDF GeneExpressionSignature
PDF   Reference Manual


biocViews GeneExpression, Software
Version 1.11.0
In Bioconductor since BioC 2.9 (R-2.14)
License GPL-2
Depends R (>= 2.13), Biobase, PGSEA
Suggests apcluster, GEOquery
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source GeneExpressionSignature_1.11.0.tar.gz
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