DOI: 10.18129/B9.bioc.GEOquery    

This is the development version of GEOquery; for the stable release version, see GEOquery.

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: Development (3.7)

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis <sdavis2 at>

Maintainer: Sean Davis <sdavis2 at>

Citation (from within R, enter citation("GEOquery")):


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biocViews DataImport, Microarray, OneChannel, SAGE, Software, TwoChannel
Version 2.47.18
In Bioconductor since BioC 1.8 (R-2.3) (12 years)
License GPL-2
Depends methods, Biobase
Imports httr, readr, xml2, dplyr, tidyr, magrittr, limma
Suggests knitr, rmarkdown, BiocGenerics, testthat, covr
Depends On Me DrugVsDisease, dyebiasexamples, GEOmetadb, GSE62944, SCAN.UPC
Imports Me AnnotationHubData, BeadArrayUseCases, bigmelon, ChIPXpress, coexnet, crossmeta, EGAD, MACPET, minfi, MoonlightR, recount, SRAdb
Suggests Me airway, antiProfilesData, AUCell, ctsGE, dyebias, ELBOW, EpiDISH, GeneExpressionSignature, multiClust, MultiDataSet, omicsPrint, parathyroidSE, pathprint, PGSEA, prostateCancerCamcap, prostateCancerGrasso, prostateCancerStockholm, prostateCancerTaylor, prostateCancerVarambally, RGSEA, Rnits, runibic, skewr, TargetScore, zFPKM
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