MSstats

Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments

Bioconductor version: Development (3.0)

A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.

Author: Meena Choi <choi67 at purdue.edu>, Ching-Yun Chang <chang54 at purdue.edu>, Olga Vitek <ovitek at purdue.edu>

Maintainer: Meena Choi <choi67 at purdue.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MSstats")

To cite this package in a publication, start R and enter:

    citation("MSstats")

Documentation

PDF R Script Protein quantification in LC-MS, SRM, DIA experiments
PDF   Reference Manual
Text   NEWS

Details

biocViews MassSpectrometry, Proteomics, Software
Version 2.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends R (>= 3.0), Rcpp, MSnbase, reshape
Imports lme4, marray, limma, gplots, ggplot2, preprocessCore
Suggests
System Requirements
URL
Depends On Me
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Package Downloads

Package Source MSstats_2.3.0.tar.gz
Windows Binary MSstats_2.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MSstats_2.3.0.tgz
Mac OS X 10.9 (Mavericks)
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