TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets.

Bioconductor version: Development (3.0)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TransView")

To cite this package in a publication, start R and enter:

    citation("TransView")

Documentation

PDF R Script An introduction to TransView
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version 1.9.0
In Bioconductor since BioC 2.11 (R-2.15)
License GPL-3
Depends methods, GenomicRanges
Imports Rsamtools, zlibbioc, gplots, IRanges
Suggests RUnit, pasillaBamSubset
System Requirements
URL http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source TransView_1.9.0.tar.gz
Windows Binary TransView_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) TransView_1.9.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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