To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("biobroom")

In most cases, you don't need to download the package archive at all.

biobroom

 

   

This is the development version of biobroom; for the stable release version, see biobroom.

Turn Bioconductor objects into tidy data frames

Bioconductor version: Development (3.4)

This package contains methods for converting standard objects constructed by bioinformatics packages, especially those in Bioconductor, and converting them to tidy data. It thus serves as a complement to the broom package, and follows the same the tidy, augment, glance division of tidying methods. Tidying data makes it easy to recombine, reshape and visualize bioinformatics analyses.

Author: Andrew J. Bass, David G. Robinson, Steve Lianoglou, Emily Nelson, John D. Storey, with contributions from Laurent Gatto

Maintainer: John D. Storey <jstorey at princeton.edu> and Andrew J. Bass <ajbass at princeton.edu>

Citation (from within R, enter citation("biobroom")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("biobroom")

Documentation

HTML R Script Vignette Title
PDF   Reference Manual

Details

biocViews DataImport, DifferentialExpression, GeneExpression, MultipleComparison, Proteomics, Regression, Software
Version 1.5.2
In Bioconductor since BioC 3.2 (R-3.2) (1 year)
License LGPL
Depends R (>= 3.0.0), broom
Imports dplyr, tidyr, Biobase
LinkingTo
Suggests limma, DESeq2, airway, ggplot2, plyr, GenomicRanges, testthat, magrittr, edgeR, qvalue, knitr, data.table, MSnbase, SummarizedExperiment
SystemRequirements
Enhances
URL https://github.com/StoreyLab/biobroom
BugReports https://github.com/StoreyLab/biobroom/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source biobroom_1.5.2.tar.gz
Windows Binary biobroom_1.5.2.zip
Mac OS X 10.9 (Mavericks) biobroom_1.5.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/biobroom
Package Short Url http://bioconductor.org/packages/biobroom/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: