To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genomeIntervals")

In most cases, you don't need to download the package archive at all.

genomeIntervals

 

   

This is the development version of genomeIntervals; for the stable release version, see genomeIntervals.

Operations on genomic intervals

Bioconductor version: Development (3.4)

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at genzentrum.lmu.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at genzentrum.lmu.de>

Citation (from within R, enter citation("genomeIntervals")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("genomeIntervals")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genomeIntervals")

 

PDF R Script Overview of the genomeIntervals package.
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Genetics, Infrastructure, Software
Version 1.29.0
In Bioconductor since BioC 2.4 (R-2.9) (7 years)
License Artistic-2.0
Depends R (>= 2.15.0), methods, intervals (>= 0.14.0), BiocGenerics(>= 0.15.2)
Imports GenomeInfoDb(>= 1.5.8), GenomicRanges(>= 1.21.16), IRanges(>= 2.3.14), S4Vectors(>= 0.7.10)
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me girafe
Imports Me easyRNASeq
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genomeIntervals_1.29.0.tar.gz
Windows Binary genomeIntervals_1.29.0.zip
Mac OS X 10.9 (Mavericks) genomeIntervals_1.29.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/genomeIntervals
Package Short Url http://bioconductor.org/packages/genomeIntervals/
Package Downloads Report Download Stats

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