ggcyto
This is the development version of ggcyto; for the stable release version, see ggcyto.
Visualize Cytometry data with ggplot
Bioconductor version: Development (3.19)
With the dedicated fortify method implemented for flowSet, ncdfFlowSet and GatingSet classes, both raw and gated flow cytometry data can be plotted directly with ggplot. ggcyto wrapper and some customed layers also make it easy to add gates and population statistics to the plot.
Author: Mike Jiang
Maintainer: Mike Jiang <mike at ozette.com>
Citation (from within R, enter
citation("ggcyto")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ggcyto")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software, Visualization |
| Version | 1.31.2 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | file LICENSE |
| Depends | methods, ggplot2 (>= 3.5.0), flowCore(>= 1.41.5), ncdfFlow(>= 2.17.1), flowWorkspace(>= 4.3.1) |
| Imports | plyr, scales, hexbin, data.table, RColorBrewer, gridExtra, rlang |
| System Requirements | |
| URL | https://github.com/RGLab/ggcyto/issues |
See More
| Suggests | testthat, flowWorkspaceData, knitr, rmarkdown, flowStats, openCyto, flowViz, ggridges, vdiffr |
| Linking To | |
| Enhances | |
| Depends On Me | flowGate |
| Imports Me | CytoML, CytoPipeline |
| Suggests Me | CATALYST, flowCore, flowStats, flowTime, flowWorkspace, openCyto |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ggcyto |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ggcyto |
| Package Short Url | https://bioconductor.org/packages/ggcyto/ |
| Package Downloads Report | Download Stats |