DOI: 10.18129/B9.bioc.openCyto    

This is the development version of openCyto; for the stable release version, see openCyto.

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: Development (3.7)

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at>

Citation (from within R, enter citation("openCyto")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script An Introduction to the openCyto package
HTML R Script How to use different auto gating functions
HTML R Script How to write a csv gating template
PDF   Reference Manual
Text   NEWS


biocViews DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version 1.17.5
In Bioconductor since BioC 2.13 (R-3.0) (4.5 years)
License Artistic-2.0
Depends flowWorkspace(>= 3.17.43)
Imports methods, Biobase, gtools, flowCore(>= 1.31.17), flowViz, ncdfFlow(>= 2.11.34), flowWorkspace, flowStats(>= 3.29.1), flowClust(>= 3.11.4), MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
LinkingTo Rcpp
Suggests flowWorkspaceData, knitr, testthat, utils, tools, parallel, ggcyto
Depends On Me
Imports Me CytoML
Suggests Me flowCore, ggcyto
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Source Package openCyto_1.17.5.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) openCyto_1.17.5.tgz
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