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This is the development version of openCyto; for the stable release version, see openCyto.

Hierarchical Gating Pipeline for flow cytometry data

Bioconductor version: Development (3.0)

This package is designed to facilitate the automated gating methods in sequential way to mimic the manual gating strategy.

Author: Mike Jiang, John Ramey, Greg Finak, Raphael Gottardo

Maintainer: Mike Jiang <wjiang2 at>

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Citation (from within R, enter citation("openCyto")):




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HTML R Script An Introduction to the openCyto package
HTML R Script How to write a csv gating template
PDF   Reference Manual


biocViews DataImport, DataRepresentation, FlowCytometry, Preprocessing, Software
Version 1.3.12
In Bioconductor since BioC 2.13 (R-3.0)
License Artistic-2.0
Depends flowWorkspace(>= 3.11.10)
Imports methods, Biobase, gtools, flowCore, flowViz, ncdfFlow, flowStats, flowClust, MASS, clue, plyr, RBGL, graph, data.table, ks, RColorBrewer, lattice, rrcov, R.utils
Suggests flowWorkspaceData, knitr, testthat, utils, tools
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source openCyto_1.3.12.tar.gz
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Mac OS X 10.6 (Snow Leopard) openCyto_1.3.12.tgz
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