iASeq

iASeq: integrating multiple sequencing datasets for detecting allele-specific events

Bioconductor version: Development (3.0)

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("iASeq")

Citation (from within R, enter citation("iASeq")):

Documentation

PDF R Script iASeq Vignette
PDF   Reference Manual

Details

biocViews ChIPSeq, RNASeq, SNP, Software
Version 1.9.0
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-2
Depends R (>= 2.14.1)
Imports graphics, grDevices
Suggests
System Requirements
URL
Depends On Me
Imports Me
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Package Downloads

Package Source iASeq_1.9.0.tar.gz
Windows Binary iASeq_1.9.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) iASeq_1.9.0.tgz
Mac OS X 10.9 (Mavericks) iASeq_1.9.0.tgz
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