msmsEDA

Exploratory Data Analysis of LC-MS/MS data by spectral counts

Bioconductor version: Development (3.0)

Exploratory data analysis to assess the quality of a set of LC-MS/MS experiments, and visualize de influence of the involved factors.

Author: Josep Gregori, Alex Sanchez, and Josep Villanueva

Maintainer: Josep Gregori <josep.gregori at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("msmsEDA")

To cite this package in a publication, start R and enter:

    citation("msmsEDA")

Documentation

PDF R Script msmsEDA: Batch effects detection in LC-MSMS experiments
PDF   Reference Manual

Details

biocViews MassSpectrometry, Proteomics, Software
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-2
Depends R (>= 3.0.1), MSnbase
Imports MASS, gplots, RColorBrewer
Suggests
System Requirements
URL
Depends On Me msmsTests
Imports Me
Suggests Me

Package Downloads

Package Source msmsEDA_1.3.0.tar.gz
Windows Binary msmsEDA_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) msmsEDA_1.3.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center