mzID

An mzIdentML parser for R

Bioconductor version: Development (3.0)

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quick.

Author: Thomas Lin Pedersen, Vladislav A Petyuk with contributions from Laurent Gatto and Sebastian Gibb.

Maintainer: Thomas Lin Pedersen <thomasp85 at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mzID")

To cite this package in a publication, start R and enter:

    citation("mzID")

Documentation

PDF R Script Using mzID
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, MassSpectrometry, Proteomics, Software
Version 1.3.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL (>= 2)
Depends methods
Imports XML, plyr, parallel, doParallel, foreach, iterators
Suggests
System Requirements
URL
Depends On Me
Imports Me MSnbase
Suggests Me

Package Downloads

Package Source mzID_1.3.0.tar.gz
Windows Binary mzID_1.3.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mzID_1.3.0.tgz
Mac OS X 10.9 (Mavericks)
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