mzR

parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

Bioconductor version: Development (3.0)

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML. The netCDF reading code has previously been used in XCMS.

Author: Bernd Fischer, Steffen Neumann, Laurent Gatto

Maintainer: Bernd Fischer <bernd.fischer at embl.de>, Steffen Neumann <sneumann at ipb-halle.de>, Laurent Gatto <lg390 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mzR")

To cite this package in a publication, start R and enter:

    citation("mzR")

Documentation

PDF R Script mzR, Ramp, mzXML, mzData, mzML
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.11.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends Rcpp (>= 0.10.1), methods, utils
Imports Biobase
Suggests msdata(>= 0.1.9), RUnit, faahKO
System Requirements GNU make, NetCDF, zlib
URL
Depends On Me MSnbase, TargetSearch, xcms
Imports Me RMassBank
Suggests Me qcmetrics, RforProteomics

Package Downloads

Package Source mzR_1.11.0.tar.gz
Windows Binary mzR_1.11.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mzR_1.11.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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