To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("panelcn.mops")

In most cases, you don't need to download the package archive at all.

panelcn.mops

DOI: 10.18129/B9.bioc.panelcn.mops    

This is the development version of panelcn.mops; for the stable release version, see panelcn.mops.

CNV detection tool for targeted NGS panel data

Bioconductor version: Development (3.7)

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Author: Verena Haunschmid, Gundula Povysil

Maintainer: Gundula Povysil <povysil at bioinf.jku.at>

Citation (from within R, enter citation("panelcn.mops")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("panelcn.mops")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("panelcn.mops")

 

PDF R Script panelcn.mops: Manual for the R package
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection
Version 1.1.0
License LGPL (>= 2.0)
Depends R (>= 3.4), cn.mops, methods, utils, stats, graphics
Imports GenomicRanges, Rsamtools, IRanges, S4Vectors, GenomeInfoDb, grDevices
LinkingTo
Suggests knitr, rmarkdown, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package panelcn.mops_1.1.0.tar.gz
Windows Binary panelcn.mops_1.1.0.zip
Mac OS X 10.11 (El Capitan) panelcn.mops_1.1.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/panelcn.mops
Package Short Url http://bioconductor.org/packages/panelcn.mops/
Package Downloads Report Download Stats

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